MidgeBase gene description page [Pn.12012]
Outline
| Gene ID | Pn.12012 |
| Type | Protein coding gene |
| Scaffold | PnScaf15206 |
| Start | 10731 |
| End | 12473 |
| Direction | - |
Sequence
Transcript: 1653 (bp)
ATGCAAAAGGGCGAGGGAACATCGTGCTACTACAGATTTCTCACGAAGGGCCAGCAATGGATTTGGCTGCAGACACGCTTCTACATCACGTACCATCAGTGGAACTCGAAGCCCGAGTTCGTAGTGTGTACGCACCGTGTTGTGAGCTACGCTGACGTGATGAAGCAAATGCGAAAGGGCGGCAGTGGGAGTGTGCTGAAGGACATCGAGGACAACGATAGCGCGGCAGAGGACCGTGGCAAGGCGCCCACGTCCACCTCCATGATGGCCACGTCACCGTGGAGCTCGAAGAGCTCACGAGCGTCAAAGTCCATCGTGCACACGCAAGAGTCGCCAAACGTCAAAATGAAGCGATATCAGTCGTATCGGCCGGACTCTGACTCCACGTCAATGTCGGCCGACTCGCCGCTCAGCCATCATTCGATCTTGACCCAACACAGCTCCGTCAGTCAGCGCTCTCGATCTCGTCCGACTGTACAAACGTCAAAACTTTCGAACCAGCAACAGCCGCAGCAGCAGCAGCCACAGCAGCATCACCAGCAATATTCACAATTCAACTTACCTCATCCTCAGGTTCTCCCCGCCAACCCGCAACAACAGCCGACGCAGACCCTAAATCAGCCGCAGCCGCAGGGAATCACGATCCACCCGCCTCCCATCTCCGGCCAAATCATGCCGCACCACCTCCAACGAACGACGACGACCACGCAAATCATCGGCACGCCATTCACCGATCAGTCGCCGTACATCGCTGCGATTCCGGTGCAGCCGGTCATCGGCCCGCCGACGCCCTTTCCGACTTCAGCAACTGTGATCTCACCGCTCCTCCCGCCACCCGACTACGTTCACTCGAATGTCGTTCTGACGCCCGCACAAAACCAAATCCAGGACCACCTCCAGAGGAAGCACGAGGAGCTGCAGAAGCTGATTGTACAGCAGCAGGACGAGCTGAGGCGAGTGAGCGAGCAGCTGTTCATGGCTCGCTACGGCCTCCTGCCGCCCATCGTGAACGTGTCGCTTCCGTTTGTCGCGCCGATGGATCACGCACCGGACACGGGCGAAAATAGCCGGTGCATGAGCACCTCGTCCTCGCATTTATCACAGCAACCGCCTTACGAGCAACAGCATCATCAGCCTGCGATGATTCAGCATCAAGTGATGCCAGTGGCGCAGAATCAGGCGACACAGCAAGTCCATGTGCAGCAACACACACTACAGCAGCAGCAACAACAACAACAGCCGCAGCAACAAAATCAGCAGCCTCAAGTGATGCACCAACTGAACATGATGCAACAGACCACACAGCAACAGCAACAACACATGACGACGGCTGTCGTTTACGACATGAACACGCAACAGCAGCAGCAGCAACAACAACAACAGCAACAACAAAAGACAAATCTTCCAACACACATCGACCAATTGATGGAGGCCGATCAAACGAACAATGACATTATGCAATATATGCAGCATCAAGGAATGAACAGCCAGAATAATCAGACGGGAGGCATCCATCAAATGTCACAGCAACAGCCGCAACAAATGATGACGAGCGATGACTTTGAGCTGATGCCGATGCCCTTTCAAATGATGAACTCTCAAATTTTATATTCGAGTGGAACGACAAACAGTGCCAACACTAGTGCTAACAAG
Protein: 551 (aa)
MQKGEGTSCYYRFLTKGQQWIWLQTRFYITYHQWNSKPEFVVCTHRVVSYADVMKQMRKGGSGSVLKDIEDNDSAAEDRGKAPTSTSMMATSPWSSKSSRASKSIVHTQESPNVKMKRYQSYRPDSDSTSMSADSPLSHHSILTQHSSVSQRSRSRPTVQTSKLSNQQQPQQQQPQQHHQQYSQFNLPHPQVLPANPQQQPTQTLNQPQPQGITIHPPPISGQIMPHHLQRTTTTTQIIGTPFTDQSPYIAAIPVQPVIGPPTPFPTSATVISPLLPPPDYVHSNVVLTPAQNQIQDHLQRKHEELQKLIVQQQDELRRVSEQLFMARYGLLPPIVNVSLPFVAPMDHAPDTGENSRCMSTSSSHLSQQPPYEQQHHQPAMIQHQVMPVAQNQATQQVHVQQHTLQQQQQQQQPQQQNQQPQVMHQLNMMQQTTQQQQQHMTTAVVYDMNTQQQQQQQQQQQQQKTNLPTHIDQLMEADQTNNDIMQYMQHQGMNSQNNQTGGIHQMSQQQPQQMMTSDDFELMPMPFQMMNSQILYSSGTTNSANTSANK
| Type | Start | End | Length |
| CDS |
10734 |
11933 |
1200 |
| CDS |
12021 |
12473 |
453 |
| intron |
11934 |
12020 |
87 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001662706 |
circadian locomoter output cycles kaput protein (dclock) (dpas1) [Aedes aegypti] gb|EAT35264.1| circadian locomoter output cycles kaput protein (dclock) (dpas1) [Aedes aegypti] |
2e-74 |
| InterPro |
IPR001610 |
PAC motif |
|
| InterPro |
IPR013655 |
PAS fold-3 |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF08447.6 |
PAS fold |
2.5e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM426300-PA |
| D. melanogaster |
FBgn0023076 |
| A. mellifera |
GB17107-PA |
| H. sapiens |
ENSP00000370723 |
| D. plexippus |
DPOGS206046PA |
| P. vanderplanki |
Pv.04113 |
| H. sapiens |
ENSP00000338283 |
| H. melpomene |
HMEL008784-PA |
| N. vitripennis |
NV19013-PA |
| A. gambiae |
AGAP005711 |
| B. mori |
BGIBMGA000498-TA |
| M. musculus |
ENSMUSG00000029238 |
| T. castaneum |
TC000088 |
| H. sapiens |
ENSP00000396649 |
| S. invicta |
SI2.2.0_15710 |
| C. quinquefasciatus |
CPIJ002146 |
| A. aegypti |
AAEL012562 |
| H. sapiens |
ENSP00000426983 |
| C. quinquefasciatus |
CPIJ002147 |
| M. musculus |
ENSMUSG00000026077 |
| H. sapiens |
ENSP00000308741 |
| H. sapiens |
ENSP00000438428 |