MidgeBase gene description page [Pn.12000]
Outline
| Gene ID | Pn.12000 |
| Type | Protein coding gene |
| Scaffold | PnScaf15200 |
| Start | 10600 |
| End | 13380 |
| Direction | + |
Sequence
Transcript: 2649 (bp)
ATGGCAAACACAATTCAGAAAGCATTAAATCTCGATCCAAAATCCCAGAAGAAATTCATCGAGTTTTATCAGAATGAAATTGAAAAGCAGTCAAAGGATACTCGAGTATTTCACGCTTTCGAGAGAAATGAATATTTTTCAATTCACGGATCAGACGTAGATATTGCGCTAAAAACAGCGCTCAAGTCCTCGATCATTGTCAAAATGATGGCGCCAGAAGCAGGATTAGAGCTGAGATATGCGACTTTGAACCGAAATCTAATGGAGAGACTAATAAGAGAGCTCTTACTCGTTCAGTTCTATCGGGTGGAAGTGTATGTTAATAAGAAAGACGAGTATTGCCTCTCATACAAAGGATCGCCGGGAAATCTAGCTCAGTTTGAAACTCTGCTCAACAACTCGGCCGACTCCGAAGTATTTTCCAATCTGCTTGTCTCTCTACAATTGTCGGTCAATCAACAGCAAAAGAAAATTGGACTGTGCTCGATTGACTCCGATGAATCAATGATCCATGTCGCTGAGTTCGATGATACGGACTTTTTTATGGAACTGGAAGCTGCGCTTGTGGTGCTCTCTCCAAAGGAAGTGCTATTGCCATCCGTTACAGGAGATTACGAGAAAATTAAAGAGGTCCTTGATCGCAACAACATTCTCACGACGCAGCTCAAGAAGTCGGATTATGCAACGAACTCAGAGTTCCATCAAGATCTGGAGAAAATTTATCGCTTTCGCAAGGAGCAGCAACGCAACATTCATGCTCTCCCGGAAGTGAAATTAGATGTTGCAATGGGTGCTTTGGCAGCTGCTATGAAGTATCTTGATATCGTCAACGAGGAGAACAGCATGTCCAAGTTCTCAGTTAAAGTATTAAATTTAAATCGATTCGTGCACATGGACATTTCAGCATTCAATGCGCTCAATTTATTCCCAACGCCCGGCACTAGCTTCAGATCACAAAACTACAGAAGTCAATCAGTATTAGGCGTATTAGATCGCTGCAAAACAAATCAGGGAAGGAGACTGCTTCGTCAGTGGATCAAGCAGCCGCTGAAGAACCTTGAAATGATCACAGAACGACTCGATGTCGTGCAGTCTTTTGTGGAAGCTCAAGAAGTTCAGTCAACTCTTTTCAAGGAGTATTTGAACATAATTCCTGATATTCTGATGCTGACAAATAAGTTGTCACGCAAACGTGGCTCTTTAATCGATGTTTTCAAAATTTATCAAGTCATTCGTCGAATACCGGAAATCGTAAATCTTCTCAACGATCTTGATTGCAACGCGATAAGGACTCTCATCTTGTCACCGCTGAATGATTTAAAACGGGATTTTAAGAAAATCTGCACCATGATCGAAGAAGTAATTGATTCTGAGAGTCTCAAACGGGGCGAATATTTGGTGCGTGCTTCCTTCGATCCGGAACTGAACGAAATTAAGGAAAAAATGGATGAGATTGAAGCGAAAATGAATAAGGAAACGAAGCATTGGTCAAAAACCCTCGGCCTTGACGATTTAAAGCTCGACTATGTTAGTCATCTTGGCTATTATTTTCGCCTGAGTCGCAAGGAGGATCAAAATATTCGAAAGTTTAAACAATTCGAAGTCATCGACACGGCAAAAGGAGGTTTACGAGCTACGACAGCAAAGTTGAGGGATTTAAACGCCGACTACGCACAGTTGAAAGAAACTTACGAGGAGCAACAGAAAAAAATTGTCGATGAAATTTGTCGCGTAACACAAGGCTACTCGCTTTCATTGACAAGCTTGAATCACATTATCGCGACGCTTGATGTTTTTGTAAGCTTATCTCAAGTCGTCCTAGACTCGCCTGGCTCCTACGTTCGTCCTCAAATGTTTTCAGAAAACGAGCGAGTTTTGCAAATTGAGGAGCTGCGGCATCCGTGTCTAGAGTGTCAGGAGGATATGGAGTTCATACCAAATGACGTTAATTTCAAGCAAGATGAAAGTGAATTTCTTATCATTACCGGTGCAAACATCTCAGGAAAATCAACATACATTCGAAGCATTGGCATTGCTGTGTTACTTGCTCACATTGGCTGCTTTGTGCCGTGTGAAAGCGCAAAAATTTCAATTTTCGATTCTATACTTGCACGAATCGGCGCCACTGACGATATTCAGAAGAATCTTTCAACATTTGCGATGGAAATGGTCGAGACGAGCGCAATTTTGAGAACAGCGACCAAGAACTCGCTTATAATTATTGATGAACTGGGAAGAGGCACTTCAACTTTTGAGGGCATGGGACTTGCTTGGGCCATTTCCGAACACTTGGCAATGAACGTTAAATGCTTTACTCTTTTTGCGACACATTTCCATGAAATTACTGCTCTTGCGGACGAGCTGCCGAACGTCAAAAACTATCATCTTGCGTCTTTGGTCGAAAACGATAAGCTCACGCTTCTTTTTAAAGTAAAGCCGGGCGCTATGACCAAATCGTTTGGAATTCAAGTAGCCACCATTGCACAATTGCCAGAATCCGTGATTTCTTCGGCAAAACGTTATTTAGATGAACTCGAAGTTAAAGATGCCGAAGATGAACCGAGTGAAAAAGTGGCTAAAATTGAGGATTTGCTGAAGAGAATCGAAGAAGATAAGAACTTTGACATTGATTCGTTATCTAATTTTCTG
Protein: 883 (aa)
MANTIQKALNLDPKSQKKFIEFYQNEIEKQSKDTRVFHAFERNEYFSIHGSDVDIALKTALKSSIIVKMMAPEAGLELRYATLNRNLMERLIRELLLVQFYRVEVYVNKKDEYCLSYKGSPGNLAQFETLLNNSADSEVFSNLLVSLQLSVNQQQKKIGLCSIDSDESMIHVAEFDDTDFFMELEAALVVLSPKEVLLPSVTGDYEKIKEVLDRNNILTTQLKKSDYATNSEFHQDLEKIYRFRKEQQRNIHALPEVKLDVAMGALAAAMKYLDIVNEENSMSKFSVKVLNLNRFVHMDISAFNALNLFPTPGTSFRSQNYRSQSVLGVLDRCKTNQGRRLLRQWIKQPLKNLEMITERLDVVQSFVEAQEVQSTLFKEYLNIIPDILMLTNKLSRKRGSLIDVFKIYQVIRRIPEIVNLLNDLDCNAIRTLILSPLNDLKRDFKKICTMIEEVIDSESLKRGEYLVRASFDPELNEIKEKMDEIEAKMNKETKHWSKTLGLDDLKLDYVSHLGYYFRLSRKEDQNIRKFKQFEVIDTAKGGLRATTAKLRDLNADYAQLKETYEEQQKKIVDEICRVTQGYSLSLTSLNHIIATLDVFVSLSQVVLDSPGSYVRPQMFSENERVLQIEELRHPCLECQEDMEFIPNDVNFKQDESEFLIITGANISGKSTYIRSIGIAVLLAHIGCFVPCESAKISIFDSILARIGATDDIQKNLSTFAMEMVETSAILRTATKNSLIIIDELGRGTSTFEGMGLAWAISEHLAMNVKCFTLFATHFHEITALADELPNVKNYHLASLVENDKLTLLFKVKPGAMTKSFGIQVATIAQLPESVISSAKRYLDELEVKDAEDEPSEKVAKIEDLLKRIEEDKNFDIDSLSNFL
| Type | Start | End | Length |
| CDS |
10600 |
10633 |
34 |
| CDS |
10704 |
12706 |
2003 |
| CDS |
12766 |
13377 |
612 |
| intron |
10634 |
10703 |
70 |
| intron |
12707 |
12765 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001867917 |
DNA mismatch repair protein spellchecker 1 [Culex quinquefasciatus] gb|EDS45878.1| DNA mismatch repair protein spellchecker 1 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR007860 |
DNA mismatch repair protein MutS, connector |
|
| InterPro |
IPR007861 |
DNA mismatch repair protein MutS, clamp |
|
| InterPro |
IPR007696 |
DNA mismatch repair protein MutS, core |
|
| InterPro |
IPR000432 |
DNA mismatch repair protein MutS, C-terminal |
|
| Gene Ontology(BP) |
GO:0006298 |
mismatch repair |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0030983 |
mismatched DNA binding |
|
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.052 |
| Pfam |
PF00488.16 |
MutS domain V |
1.1e-95 |
| Pfam |
PF05188.12 |
MutS domain II |
4.3e-15 |
| Pfam |
PF02096.15 |
60Kd inner membrane protein |
0.02 |
| Pfam |
PF05190.13 |
MutS family domain IV |
7.6e-18 |
| Pfam |
PF05192.13 |
MutS domain III |
3.3e-52 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.04368 |
| B. mori |
BGIBMGA011490-TA |
| H. sapiens |
ENSP00000442697 |
| H. melpomene |
HMEL002565-PA |
| T. castaneum |
TC002071 |
| N. vitripennis |
NV16605-PA |
| P. humanus |
PHUM253730-PA |
| A. aegypti |
AAEL014856 |
| D. plexippus |
DPOGS213735PA |
| A. gambiae |
AGAP010282 |
| A. mellifera |
GB11459-PA |
| C. quinquefasciatus |
CPIJ802444 |
| H. sapiens |
ENSP00000384199 |
| H. sapiens |
ENSP00000233146 |
| S. invicta |
SI2.2.0_12798 |
| M. musculus |
ENSMUSG00000024151 |
| D. plexippus |
DPOGS203760PA |
| D. melanogaster |
FBgn0015546 |