MidgeBase gene description page [Pn.11995]
Outline
| Gene ID | Pn.11995 |
| Type | Protein coding gene |
| Scaffold | PnScaf15175 |
| Start | 583 |
| End | 2205 |
| Direction | + |
Sequence
Transcript: 855 (bp)
ATGAAATTCCTCGGTTTTGTTCTCCTCGCAGCAGCAGCCGCCTCAGCGCTGCCCCAGCGGTCGCTAAATTTCAATCCCTACCTCAGCTACAACGCCATCCGGCTGCCGGAGAACCCGGAGAGCCGCATCGTGGGCGGCAACTCCACCGACATCGCCGAGTTTCCCTACATCGTGTCGCTGCAGTTCAACGGCCGCCATCGCTGCGGCGCCAACATCATCAGCGAGCAGTTCGTGCTCACGGCCGCCCACTGCACCTCCGGCCTCACGGCGACCCTCTTGAGCATCCGAGCCGGCTCCTCGTACAAGGAGCAGGGCGGCGTCGTCGTCAACATCGCACAAATTTTCGATCATCCGCAGTACGATCCGAGTCTCATCGACTACGACTTCTCCGTGCTGCGGACGGCGAAGGCGCTCACCTTCGGCAAGACCATCCAGTCGATCCCGATTGCCGGCCAGGACGAGGCCTTTCCCGTCAACCAGTTCATGAAGACTCTCGGCTGGGGCAACACCATGAACCCCAACGAGTCCAACGACCGTCTCCGCGTGGTCTACGTTCCGAAGATCGACTTCGATGTTTGCGTGAAGCAATACGCTGCCATCAATGCACGCGTCACCGAGCGAATGATGTGCGCTGGATTTCCCGAGGGTGGCCGCGACGCTTGCCAAGGCGACTCGGGCGGACCATTGGCTGACGGCTCGTACTATGGCCTCAAGCCAGAGGAAGGTAAAACGGACAGCAAACTCTACGGCGTTGTTTCATGGGGCTTTGGCTGTGCTCGTCCAAACTTCCCAGGCGTCTACGCTAGAATTGCATCGGTCAGCGACTGGGTGAAGGGAATCGCAAAGCTCAGCTAC
Protein: 285 (aa)
MKFLGFVLLAAAAASALPQRSLNFNPYLSYNAIRLPENPESRIVGGNSTDIAEFPYIVSLQFNGRHRCGANIISEQFVLTAAHCTSGLTATLLSIRAGSSYKEQGGVVVNIAQIFDHPQYDPSLIDYDFSVLRTAKALTFGKTIQSIPIAGQDEAFPVNQFMKTLGWGNTMNPNESNDRLRVVYVPKIDFDVCVKQYAAINARVTERMMCAGFPEGGRDACQGDSGGPLADGSYYGLKPEEGKTDSKLYGVVSWGFGCARPNFPGVYARIASVSDWVKGIAKLSY
| Type | Start | End | Length |
| CDS |
583 |
1079 |
497 |
| CDS |
1581 |
1751 |
171 |
| CDS |
1915 |
2008 |
94 |
| CDS |
2110 |
2202 |
93 |
| intron |
1080 |
1580 |
501 |
| intron |
1752 |
1914 |
163 |
| intron |
2009 |
2109 |
101 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657786 |
trypsin [Aedes aegypti] gb|EAT42001.1| trypsin [Aedes aegypti] |
5e-62 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF09342.6 |
Domain of unknown function (DUF1986) |
0.11 |
| Pfam |
PF00089.21 |
Trypsin |
2.1e-56 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ018529 |
| C. quinquefasciatus |
CPIJ019781 |
| A. aegypti |
AAEL012852 |
| P. vanderplanki |
Pv.10486 |