MidgeBase gene description page [Pn.11982]
Outline
| Gene ID | Pn.11982 |
| Type | Protein coding gene |
| Scaffold | PnScaf15103 |
| Start | 4512 |
| End | 6734 |
| Direction | - |
Sequence
Transcript: 1428 (bp)
ATGGTCCTAGAACTAAGAGACGTAATCAGCACTGAAAACATCGAAGAGAATTTGAAGGATTTCGACCTCAACCGCACCTACTTTTGCTTCACGGACTCGAGCGAGTACGATCGACCAGCATGGATGCTTCGAAACTTCATCCTTCTTCTTACAAAGCTCTGCCCGAAAATTCACGGTAACTCTCTCAAAATTCTCGCCATTCGTCGTGACCAGCGAGGTTCGCTCGCGCCGAGTCGCATTTTTCACGCCAAAATTCCGCAAAAAATCAACTTTTCTTCACCAAAATATACCGGCTGGGAGAGAAACGCCCACAACAAGCTTTTGCCGCGAACGGCGAGTATGGCGGCGAGCATGGACCCGGTGCGGATTGCGGAGCATTTTTCGCGCCTCAACATCAAGCTCATGCAGTGGCGTCTTCTTCCATCCCTCGATCTTGACATTCTCCGTCAGCAGCGCTGTCTGCTTTTCGGCGCTGGCACTCTCGGCTGCTCTATCGCGCGCTCTCTCATCGGCTGGGGCATCGACAAAATCACCTTCGTGGACTGTGGTCACGTGAGTCACTCAAACCCGGTGCGCCAGTCGCTCTTCACGCATCGCGACGCCCTCGAGGGGAAATTCAAGGCTGAGGCAGCCGCCGAGAGGCTGCGCGATGTTTTGCCGAGCGTCACGACCGCTGGTCACGTGCTGCAGATTCCGATGCCCGGGCATCCGCCAAATGACGCGACCAATGGAGAAATTGAGAAAATTGAGGCTTTGGTCGATGCCCATGACGTTCTTTTTCTGATCACGGATTCCCGCGAGTCGCGCTGGCTGCCGACACTTTTGGGTGCGCACAGAAGGAAAACCGTTATCACTGTCGCCCTTGGGTTTGACAGCTACCTCGTTATGAGACATGGTGGGAGCAGAGGGAGAGCGGTGAAGGAAGGTGCGCAGCGCGAGGGCCTGAAGTGCATCGACGGCAATCAGCTAGGCTGCTATTTCTGCAATGATGTCACGGCACCGGGAAATTCGACGCGAGACCGCACGCTCGACCAACAGTGCACGGTCACACGACCCGGTGTGTCGAACATCGCGGCCGCGATCGCCGTTGAGGTGCTGGCGTCAATTTGTCAGCACGAGGACGGCAACTGTGCTCCGGCCTTCTATGCCAAAGCAAACAGCGGAGCGGTCCTTCCCGAAGGTATTCTGGGTGTCGTGCCGCACTCGGTTCGCGGCTACTTGAGCACTTTCACGCACATTCTACCGGCCACCGAGCGGTTCACGCAATGTGTCGCGTGCTCCGAGAAGATCCTCGAAGAGTATGAGAAAGGCGGCGTGGAATTTTTGCTGCGCGTTTTTGAGTCGGCCGACTACCTCGAAACCGTGACCGGAATCGACAAGATGGCCGCCATAGAACACGACATCATCGAGGACTTTGACTCCGACACC
Protein: 476 (aa)
MVLELRDVISTENIEENLKDFDLNRTYFCFTDSSEYDRPAWMLRNFILLLTKLCPKIHGNSLKILAIRRDQRGSLAPSRIFHAKIPQKINFSSPKYTGWERNAHNKLLPRTASMAASMDPVRIAEHFSRLNIKLMQWRLLPSLDLDILRQQRCLLFGAGTLGCSIARSLIGWGIDKITFVDCGHVSHSNPVRQSLFTHRDALEGKFKAEAAAERLRDVLPSVTTAGHVLQIPMPGHPPNDATNGEIEKIEALVDAHDVLFLITDSRESRWLPTLLGAHRRKTVITVALGFDSYLVMRHGGSRGRAVKEGAQREGLKCIDGNQLGCYFCNDVTAPGNSTRDRTLDQQCTVTRPGVSNIAAAIAVEVLASICQHEDGNCAPAFYAKANSGAVLPEGILGVVPHSVRGYLSTFTHILPATERFTQCVACSEKILEEYEKGGVEFLLRVFESADYLETVTGIDKMAAIEHDIIEDFDSDT
| Type | Start | End | Length |
| CDS |
4515 |
5021 |
507 |
| CDS |
5649 |
6566 |
918 |
| CDS |
6732 |
6734 |
3 |
| intron |
5022 |
5648 |
627 |
| intron |
6567 |
6731 |
165 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002004507 |
GI19577 [Drosophila mojavensis] gb|EDW08442.1| GI19577 [Drosophila mojavensis] |
1e-146 |
| InterPro |
IPR009036 |
Molybdenum cofactor biosynthesis, MoeB |
|
| InterPro |
IPR000594 |
UBA/THIF-type NAD/FAD binding fold |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00899.16 |
ThiF family |
7.5e-27 |
| Pfam |
PF01488.15 |
Shikimate / quinate 5-dehydrogenase |
0.015 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB18366-PA |
| P. vanderplanki |
Pv.07609 |
| A. gambiae |
AGAP010303 |
| H. sapiens |
ENSP00000412580 |
| D. plexippus |
DPOGS208037PA |
| A. aegypti |
AAEL009814 |
| T. castaneum |
TC010974 |
| B. mori |
BGIBMGA001467-TA |
| H. sapiens |
ENSP00000347042 |
| N. vitripennis |
NV10323-PA |
| H. melpomene |
HMEL004052-PA |
| D. melanogaster |
FBgn0034366 |
| P. humanus |
PHUM397480-PA |
| S. invicta |
SI2.2.0_05701 |
| H. sapiens |
ENSP00000346437 |
| M. musculus |
ENSMUSG00000030314 |