MidgeBase gene description page [Pn.11958]
Outline
| Gene ID | Pn.11958 |
| Type | Protein coding gene |
| Scaffold | PnScaf14982 |
| Start | 12269 |
| End | 19494 |
| Direction | + |
Sequence
Transcript: 1593 (bp)
ATGATAGATTTAATCTTCAACCTCAAAAACCCAAAGAAACTGTTCTGCAAGAAAGAGAGGTTCAGAATCAATATGGCTCCTCTTCAAGACACAATCGAGGAATTTGACGAGATGCAGCAAAGCTCGCCAATCCAACAATTTTATAAGAACAAATCAATTTTCATCACGGGTGCAACAGGTTTCTTAGGCAAAGTTTTAATTGAGAAGCTCTTAAGAGCGTGTGACGTTGAGAGGATTTTTATTTTAATACGAAGTAAAAAAAATGACGATATCAACACCCGAATGGAAAAAATATTTGAAGATCAGTTGTTTGATCAAGTCAGAAAGAAAAACCCCAGCTATCGACAGAAAATCCATCCAATCAACGGTGACTGCATGCTGCAAGGCTTGGGCATCGACTCAGCCGATCGCGCCCTTCTCGTTAAGCACTGTAACATTGTTTTCCACGGAGCCGCAACTGTAAGGTTTGACGAAAAACTCAAGCTCGCACTCGCCATCAATGTCTGCGGAACACGAGAAATTATAAATTTAGCGAAGGAAATGGAGAAGTTGCAGGCATTCCTTCACATCTCAACAGCTTACGCTAATTGCCCACAGTATGAAATCGAGGAGAAATTCTATCCAACGCCAATCAGCGGAGAGAGTGGAACGCGCCTGGCTGAGATCTTAGACGAAGATACTCTTGAGAAAATGACACCTGTGCTGCTCCGAGACTGGCCCAACACTTACACTTACACAAAGTCACTTGCAGAGGACTACGTGAGGACTCACTCCAAATCAATGCCCGTCGCCGTCTTCCGCCCTGCAATTGTGATTCCAACTTTCCGCGAGCCCATGAGAGGATGGATCGACAACATGTATGGCCCAACTGGAATAGTGATTGGAGTTGCTGCTGGATTGCTGCGCGTTCTGCATATTTTGCCAGACAACAAAGCCGAGCTCGTTCCAGTCGACATGTGCGTCAACTCACTCATCGTGAGTGCACATGAAATTGCAGTCAATAATCATTTCGATGAGCCGCCCATTTACAATTATGTTACATCGAAAGCGAACTCAATCACTTGGCGGGACTATTGCGAATTCAGCACACTTAATGGGATAAAAGCACCATTGAGCAAGATGGCCTGGTACTTCACATTCACGATGACATCGTCGAGAGCACTTGCGACCATGTTGACATTCCTGTATCACACGGTTCCCGCCGCAATCGTCGATGCAGTGCTCGTACTTTGTGGAAAAAAGCCAAAATTGCTCGACACCTACCGCAAAATTCACAAACTTTGCAATGTCTTATCCTACTTTACTAATCGTGTGTGGAGCTTTAAGAATAACAACGTGAATAATCTTTGGAGGAAGCTAGATGTCAAAGACAAGGAACTTTTTTATTTTGACATGTCCGACATTGATTGGCCGTCATTTTTCGTTGATAGTATCTATGGAATCAGAACATATCTGATGAAGGAAGACCCTAAAACCATACCCGATGCAGTAAAAAGGCTCAAAAAGTTGAAACTCATCCACTACATTACCGTTTATGTTATTAGATTTGGAGCTTTGTATTTATTGTATAAGATTCTTAAATCGATGCTATTC
Protein: 531 (aa)
MIDLIFNLKNPKKLFCKKERFRINMAPLQDTIEEFDEMQQSSPIQQFYKNKSIFITGATGFLGKVLIEKLLRACDVERIFILIRSKKNDDINTRMEKIFEDQLFDQVRKKNPSYRQKIHPINGDCMLQGLGIDSADRALLVKHCNIVFHGAATVRFDEKLKLALAINVCGTREIINLAKEMEKLQAFLHISTAYANCPQYEIEEKFYPTPISGESGTRLAEILDEDTLEKMTPVLLRDWPNTYTYTKSLAEDYVRTHSKSMPVAVFRPAIVIPTFREPMRGWIDNMYGPTGIVIGVAAGLLRVLHILPDNKAELVPVDMCVNSLIVSAHEIAVNNHFDEPPIYNYVTSKANSITWRDYCEFSTLNGIKAPLSKMAWYFTFTMTSSRALATMLTFLYHTVPAAIVDAVLVLCGKKPKLLDTYRKIHKLCNVLSYFTNRVWSFKNNNVNNLWRKLDVKDKELFYFDMSDIDWPSFFVDSIYGIRTYLMKEDPKTIPDAVKRLKKLKLIHYITVYVIRFGALYLLYKILKSMLF
| Type | Start | End | Length |
| CDS |
12269 |
12271 |
3 |
| CDS |
13230 |
13281 |
52 |
| CDS |
16295 |
16357 |
63 |
| CDS |
16416 |
16490 |
75 |
| CDS |
17532 |
17644 |
113 |
| CDS |
17739 |
18309 |
571 |
| CDS |
18375 |
18744 |
370 |
| CDS |
19078 |
19171 |
94 |
| CDS |
19240 |
19491 |
252 |
| intron |
12272 |
13229 |
958 |
| intron |
13282 |
16294 |
3013 |
| intron |
16358 |
16415 |
58 |
| intron |
16491 |
17531 |
1041 |
| intron |
17645 |
17738 |
94 |
| intron |
18310 |
18374 |
65 |
| intron |
18745 |
19077 |
333 |
| intron |
19172 |
19239 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002098651 |
GE10485 [Drosophila yakuba] gb|EDW98363.1| GE10485 [Drosophila yakuba] |
1e-149 |
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
1.2e-07 |
| Pfam |
PF04321.12 |
RmlD substrate binding domain |
0.0021 |
| Pfam |
PF03015.14 |
Male sterility protein |
5.5e-33 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
0.034 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
1.6e-07 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
6.7e-08 |
| Pfam |
PF07993.7 |
Male sterility protein |
1.9e-72 |
| Pfam |
PF01118.19 |
Semialdehyde dehydrogenase, NAD binding domain |
0.066 |
| Pfam |
PF08659.5 |
KR domain |
0.099 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA011207-TA |
| S. invicta |
SI2.2.0_00151 |
| N. vitripennis |
NV17032-PA |
| P. humanus |
PHUM091870-PA |
| P. vanderplanki |
Pv.05650 |
| D. melanogaster |
FBgn0039620 |
| P. vanderplanki |
Pv.05187 |
| C. quinquefasciatus |
CPIJ018289 |
| D. plexippus |
DPOGS211704PA |
| T. castaneum |
TC015111 |
| A. aegypti |
AAEL006774 |
| T. castaneum |
TC015188 |
| A. mellifera |
GB11412-PA |
| A. gambiae |
AGAP011736 |
| N. vitripennis |
NV17037-PA |
| T. castaneum |
TC015203 |
| N. vitripennis |
NV17034-PA |