MidgeBase gene description page [Pn.11944]
Outline
| Gene ID | Pn.11944 |
| Type | Protein coding gene |
| Scaffold | PnScaf14921 |
| Start | 9404 |
| End | 11246 |
| Direction | - |
Sequence
Transcript: 1458 (bp)
ATGAGGCTCTTGATATCTTCGTGTATATTTTTAATTTTGCATCGCTTCAGTCATGGTGAAATTTTAACTTTTCCTGAAGGTTTTGTGTGGGGCGGAGCCACTGCGAGCTACCAGATAGAAGGCGCATGGGATGTTGATGGAAAACTACCGAGTATTTGGGACACAGCTACGCACAGAAACCCTTCAAGTGTCTTCGATAATTCGACTGGTGATGACGCTGGAATGTCATACTATTTCTACGAAAAGGATATTGAAGCACTTGTTGAGACTAATCTCAAAGTCTATCGCTTCTCAATTTCGTGGCCGAGGGTTTTGACGAAAGATAACAAGAAGAATCAGCTCGGTATTGATTACTATAAAAAGCTTATCGATGCACTGGAGGCGAGGGGAATCGAACCTATGGTTACCATGTACCATTGGGATCTACCGCAGTATCTCCAGGACCTCGGTGGCTGGACAAACCCGGCGATGGTTAAATACTTTGGAATCTACGCTGATCTTCTATACCGTGAGTTCGGCGATCGTGTAAAGGAGTGGATTACTTTCAATGAGCCAGCAACTTTCTGCGACCTAGGCTACGCTTGGGGTGTTCATGCACCGGAGATTTCGACAGACAGGAAAATTGGCAGCTACTTGTGCTCGCACCACATTCTGCTGGCTCACGCAGAAGCCTACAGGATCTACAAAGAGAAGTACGTCGAAACCCAGGGAGGTAAAGTCGGCATTTGCCTCAACACTGGCTACAAGTTCCCAACAGAAAATGCCACATTGGAGACGACGGACAAGGCACTTTACTTTGACCTCGGTCGCTATGCAAATCCAATTTTCACGCCAGAGGGCGACTATCCAAGGGTGATGAGAGACGCAATCGATAGAAAGAGTGCAGCCGAGGGAAGACGATGGTCACGATTGCCCAAGTTTACCGCCGAAGAAGTTGAGCTACTCAAAGGGTCGTCGGACTTTCTCGCTTTGAACTATTACACAAGCAATTATGTCACGCCTTTCTCGCTAATCCCCGGCTCCGATCCCAGCTCGAGCGACGAGGAAATTGAGCATACCGTCGACCCTGCATGGAAAGGATCTGCCAGCGACTGGCTCAAGCAGGTTCCAGACGGCTTCCGTGAGCTTTTGAAGTGGATTAAAGACAAGTACAACAACCCGACTGTCTACATCACTGAAAACGGCTGGTCAGATGAGCCGAATACCATCAACGACGCTGGCAGAGTTGAATATCTTCAGCTTCACTTGAAAGCGATGCACGAAGCCATTACTGCTGGCTGTAACATAACAAAGTACACTGTTTGGAGCTTGGTCGATAACTTTGAGTGGATGCGTGGATATTCTGAGAGGTTTGGCATCTACTCGATTAATTTTGATGATCCGAATAGACCGAGAATTCGGAAGGACTCTGCAAGGTGGTTCGCAGAGGTTGCTCGCACCAATTCTATTGAAGTTCCA
Protein: 486 (aa)
MRLLISSCIFLILHRFSHGEILTFPEGFVWGGATASYQIEGAWDVDGKLPSIWDTATHRNPSSVFDNSTGDDAGMSYYFYEKDIEALVETNLKVYRFSISWPRVLTKDNKKNQLGIDYYKKLIDALEARGIEPMVTMYHWDLPQYLQDLGGWTNPAMVKYFGIYADLLYREFGDRVKEWITFNEPATFCDLGYAWGVHAPEISTDRKIGSYLCSHHILLAHAEAYRIYKEKYVETQGGKVGICLNTGYKFPTENATLETTDKALYFDLGRYANPIFTPEGDYPRVMRDAIDRKSAAEGRRWSRLPKFTAEEVELLKGSSDFLALNYYTSNYVTPFSLIPGSDPSSSDEEIEHTVDPAWKGSASDWLKQVPDGFRELLKWIKDKYNNPTVYITENGWSDEPNTINDAGRVEYLQLHLKAMHEAITAGCNITKYTVWSLVDNFEWMRGYSERFGIYSINFDDPNRPRIRKDSARWFAEVARTNSIEVP
| Type | Start | End | Length |
| CDS |
9407 |
10063 |
657 |
| CDS |
10130 |
10520 |
391 |
| CDS |
10575 |
10711 |
137 |
| CDS |
10909 |
11078 |
170 |
| CDS |
11144 |
11246 |
103 |
| intron |
10064 |
10129 |
66 |
| intron |
10521 |
10574 |
54 |
| intron |
10712 |
10908 |
197 |
| intron |
11079 |
11143 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
BAB91145 |
beta-glucosidase [Neotermes koshunensis] |
1e-133 |
| InterPro |
IPR001360 |
Glycoside hydrolase, family 1 |
|
| InterPro |
IPR018120 |
Glycoside hydrolase, family 1, active site |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00232.13 |
Glycosyl hydrolase family 1 |
3.8e-147 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.11943 |
| Pn.11945 |
| Pn.12665 |
| Pn.12666 |
| Pn.00729 |
| Pn.11105 |
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000026354 |
| H. melpomene |
HMEL013290-PA |
| D. plexippus |
DPOGS210278PA |
| B. mori |
BGIBMGA010537-TA |
| B. mori |
BGIBMGA014178-TA |
| C. quinquefasciatus |
CPIJ014061 |
| P. vanderplanki |
Pv.09394 |
| M. musculus |
ENSMUSG00000058488 |
| H. sapiens |
ENSP00000257408 |
| B. mori |
BGIBMGA010812-TA |
| C. quinquefasciatus |
CPIJ014063 |
| M. musculus |
ENSMUSG00000029195 |
| C. quinquefasciatus |
CPIJ008531 |
| A. aegypti |
AAEL001225 |
| H. sapiens |
ENSP00000343490 |
| A. aegypti |
AAEL015020 |
| B. mori |
BGIBMGA002660-TA |
| A. gambiae |
AGAP006424 |
| D. melanogaster |
FBgn0036659 |
| D. plexippus |
DPOGS201330PA |
| D. plexippus |
DPOGS204061PA |
| N. vitripennis |
NV11958-PA |
| H. melpomene |
HMEL012825-PA |
| A. gambiae |
AGAP006423 |
| A. gambiae |
AGAP006426 |
| C. quinquefasciatus |
CPIJ008530 |
| P. vanderplanki |
Pv.16201 |
| H. melpomene |
HMEL007316-PA |
| D. plexippus |
DPOGS201328PA |
| D. plexippus |
DPOGS201926PA |
| B. mori |
BGIBMGA010811-TA |
| P. vanderplanki |
Pv.03609 |
| D. plexippus |
DPOGS201336PA |
| D. plexippus |
DPOGS201335PA |
| T. castaneum |
TC016296 |
| P. humanus |
PHUM241350-PA |
| H. sapiens |
ENSP00000369442 |
| H. sapiens |
ENSP00000445419 |
| B. mori |
BGIBMGA010536-TA |
| H. melpomene |
HMEL003519-PA |
| D. plexippus |
DPOGS202008PA |
| P. vanderplanki |
Pv.01060 |
| C. quinquefasciatus |
CPIJ008529 |
| H. melpomene |
HMEL006108-PA |
| A. aegypti |
AAEL015021 |
| N. vitripennis |
NV50643-PA |
| T. castaneum |
TC010051 |
| N. vitripennis |
NV18537-PA |
| D. plexippus |
DPOGS201332PA |
| A. aegypti |
AAEL009246 |
| M. musculus |
ENSMUSG00000032401 |
| B. mori |
BGIBMGA003512-TA |
| B. mori |
BGIBMGA002450-TA |
| B. mori |
BGIBMGA005602-TA |
| H. melpomene |
HMEL016981-PA |
| C. quinquefasciatus |
CPIJ014310 |
| T. castaneum |
TC010052 |
| H. melpomene |
HMEL013136-PA |
| D. plexippus |
DPOGS204060PA |
| D. plexippus |
DPOGS204071PA |
| C. quinquefasciatus |
CPIJ008532 |
| N. vitripennis |
NV14577-PA |
| D. plexippus |
DPOGS201337PA |
| H. sapiens |
ENSP00000391231 |
| P. vanderplanki |
Pv.12058 |
| A. aegypti |
AAEL009243 |
| D. plexippus |
DPOGS204062PA |
| T. castaneum |
TC009017 |
| D. plexippus |
DPOGS215795PA |
| H. melpomene |
HMEL013137-PA |
| A. aegypti |
AAEL009237 |
| H. melpomene |
HMEL012399-PA |
| B. mori |
BGIBMGA010735-TA |
| H. melpomene |
HMEL006689-PA |
| A. gambiae |
AGAP000481 |
| A. gambiae |
AGAP006425 |
| A. aegypti |
AAEL015022 |
| P. vanderplanki |
Pv.02017 |
| A. gambiae |
AGAP006422 |
| D. plexippus |
DPOGS201334PA |
| T. castaneum |
TC009015 |
| H. melpomene |
HMEL005931-PA |
| A. aegypti |
AAEL009236 |
| T. castaneum |
TC009016 |
| A. aegypti |
AAEL015051 |
| H. sapiens |
ENSP00000264162 |
| B. mori |
BGIBMGA005785-TA |
| D. plexippus |
DPOGS210283PA |
| T. castaneum |
TC009018 |
| A. mellifera |
GB18896-PA |
| H. melpomene |
HMEL016980-PA |
| A. aegypti |
AAEL015573 |
| N. vitripennis |
NV50780-PA |
| N. vitripennis |
NV18339-PA |
| C. quinquefasciatus |
CPIJ014311 |