MidgeBase gene description page [Pn.11922]
Outline
| Gene ID | Pn.11922 |
| Type | Protein coding gene |
| Scaffold | PnScaf14892 |
| Start | 22499 |
| End | 23921 |
| Direction | + |
Sequence
Transcript: 1281 (bp)
ATGAACCATCAATATTGGCTGACAAGAAATGCAAAAAAACTGCAAAGAAAGTTTAATGCGAAAGAAGATGAAAATATTGTACATAGTGACATTGAGCTCGACTCAAAGCTCGAATTGTTCAAGTCAATAAATGAGTCGACAGCAAATCTTTCAAACATTGTAGAAAAGTATAGGGACGCCCTCAGCTCGCTAGCTAATGAAACAACAAATTTAGGTCAGTTTCTTCGTGATTACGGGAAAAATTCTGCTTCAAGTGCATCGATCATGATGAACTCAGGAAAAGTAATCAGCTATTTAGGGCAGCAGCACTTTACGGGAATGTCCTCGCTTTCACGAACACTTCAGGAACTAAATACATTCAAGCGAGCAGTAAGCGACAGTAAGGAGACCATTCAAGCTATGGAAAAAGAAAGAACTGAATATAGAGCTGCGCTTGCCCTCATGAAAAACTGCGGTGGTGACATTGATCCAGACAGCGGCAGAGGCTTAGAAAAGTTCCGAACATCACAGAAATATGTGAAATTTGCGAAACAAAAATTTGACAAGTTTTCGTTGGCATGCTTACAAAAAATCGATCTGCTGTCAGCTGCACGATGCAATCTTTTCTCATATTCGTTGGCGACCTATCAAAACAATTGGGTAGCACTATTGCAAAAGAATCAAGAGGTGTTGGAAGCACATCTAAGGATAATCGAAAATGAACCGAAAGTGAAACATAATTTTGGAATTCTTAAGGATTTGGCTCAGGATTTTGATGAAACTGCAAATACTGCGATTGCTGCTGATTCTGTTGCTGACATACAAGCCGATACTATGAAGCTAAACGATAATGATCAGCGTTTATTCTTTGGAGAGGAATTCAGCGATCGTGGACCAGCTGAAAAGAGAACCAGTAATGATGAAAAAAATAACGATGGAAATGCAGGCAATGAGCAGATAAAGGAGAGCTTCAATGAGAAGTTGATCGATTACGAAGCGTTTGACGAGTTTATGAGTTCTTCAAATATTCTACTTCCATCTAAACTTTTAATGGACGACACAATTTTCGGTGCTGGTGAAAATATGCATTCGAACGTTGACTTACTGGGAACGCTTGCATCATCTCAAGTTCCAAACGAAATACTTGCAACAAATAGGGACAATAGCAATGGCGTTTCACTCAACAAAAATCCATCTAAGAAAGCAAATGATGTTAGTAAATGGTTTCAACTCTTCTCAGAACTTGATCCACTTAATCAACAAAAAGAAGTTAATGATGCAAACGAAAATATGCATGCCGCT
Protein: 427 (aa)
MNHQYWLTRNAKKLQRKFNAKEDENIVHSDIELDSKLELFKSINESTANLSNIVEKYRDALSSLANETTNLGQFLRDYGKNSASSASIMMNSGKVISYLGQQHFTGMSSLSRTLQELNTFKRAVSDSKETIQAMEKERTEYRAALALMKNCGGDIDPDSGRGLEKFRTSQKYVKFAKQKFDKFSLACLQKIDLLSAARCNLFSYSLATYQNNWVALLQKNQEVLEAHLRIIENEPKVKHNFGILKDLAQDFDETANTAIAADSVADIQADTMKLNDNDQRLFFGEEFSDRGPAEKRTSNDEKNNDGNAGNEQIKESFNEKLIDYEAFDEFMSSSNILLPSKLLMDDTIFGAGENMHSNVDLLGTLASSQVPNEILATNRDNSNGVSLNKNPSKKANDVSKWFQLFSELDPLNQQKEVNDANENMHAA
| Type | Start | End | Length |
| CDS |
22499 |
22584 |
86 |
| CDS |
22651 |
23134 |
484 |
| CDS |
23208 |
23918 |
711 |
| intron |
22585 |
22650 |
66 |
| intron |
23135 |
23207 |
73 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001861564 |
islet cell autoantigen 1 [Culex quinquefasciatus] gb|EDS35824.1| islet cell autoantigen 1 [Culex quinquefasciatus] |
4e-76 |
| InterPro |
IPR024114 |
Islet cell autoantigen 1/Ica1-like |
|
| InterPro |
IPR010504 |
Arfaptin homology domain |
|
| Gene Ontology(MF) |
GO:0019904 |
protein domain specific binding |
|
| Pfam |
PF03087.9 |
Arabidopsis protein of unknown function |
0.15 |
| Pfam |
PF06456.8 |
Arfaptin-like domain |
3e-47 |
| Pfam |
PF04629.9 |
Islet cell autoantigen ICA69, C-terminal domain |
0.0019 |
| Pfam |
PF04977.10 |
Septum formation initiator |
0.04 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ011282 |
| P. humanus |
PHUM186520-PA |
| H. sapiens |
ENSP00000316074 |
| H. sapiens |
ENSP00000385570 |
| N. vitripennis |
NV13958-PA |
| H. sapiens |
ENSP00000385651 |
| T. castaneum |
TC002734 |
| A. aegypti |
AAEL015017 |
| D. melanogaster |
FBgn0037050 |
| H. sapiens |
ENSP00000265577 |
| A. aegypti |
AAEL012606 |
| A. mellifera |
GB19133-PA |
| S. invicta |
SI2.2.0_05094 |
| H. sapiens |
ENSP00000386021 |
| H. sapiens |
ENSP00000403982 |
| H. sapiens |
ENSP00000379908 |
| P. vanderplanki |
Pv.07821 |
| H. melpomene |
HMEL002314-PA |
| M. musculus |
ENSMUSG00000062995 |
| H. sapiens |
ENSP00000385305 |
| A. gambiae |
AGAP006627 |