MidgeBase gene description page [Pn.11908]
Outline
| Gene ID | Pn.11908 |
| Type | Protein coding gene |
| Scaffold | PnScaf14858 |
| Start | 6065 |
| End | 7169 |
| Direction | - |
Sequence
Transcript: 972 (bp)
ATGAAAAGAAAAACAAAGCAAAAGGCTCCTCCATCGCAAACTAAACAAGTGACACTTACGCAGTTCGAAGGAGATCGCATAACAGAGCTCGCCAACGTTTATTGGACGTCTGAGAAGAAGAGTGATGAGTTGCTGCCGTTTGATCCAGCGATAGTTCAAAACATTTACGAGAATGAAATTGTAAAAGGCGATAACAGGAGAATTGTTATGCTGGAATTCAATCGCTGTCTGGAAAATTTTCTCTGGCCCAATTTCAACGAAAACTCTTCAGATCAACATCTGATGTCGATTGTATTTCTTCTCAACGAAAAGTTCCGTGAGCATATTGAGGTGTGGAAGATTTTCGAACTAAATGCAGAGAATTTTCCTGTTTTCTTCAACAAGTGCTTGCACAAATGCTTGGAAGATGAAGACGTTCTTTTTGCTAAAAGACAAGTGGTTCGCGACCAAACTGCTCTGCTCATTTTCCTGAACAACTGCTTCCGTAGCATGGAAGTTGAGATTTGTTGCGACCAAGTGAAGAAATTAGTTTCTCTCTCGATGTGGAGCTGCTTGCAGCCAAAGCGCAGAGAGCAGGAGCTCAGCTTGATTCCCGAATGGAAAAAGTACTGGAAAAAACTTCAGAAACGCGACAAGCCAGAACTGAAGGAGAAACTTGAGTGGGAGCGTCATTTTCTGCAGAATCTCATAAAAAAATTCCTCAACATTGTGGAGAGAATTCCTGCGGAAGGACCAATAAATGCGGACGTCGTTTGCTACTGCGAGAGGTTTATCGAATTGATGATCGATCTTGAAGCACTTCTGCCGACTCGTCGCTTCTTCAATACAGTATTGGATGACTCTCATCTGATTGTGCGCTGTCACATTTCGCAGCTAATGAACCGTCCGGAAGGAAAACTATTTTCTCAGGTGAGTGACTTTTTTTCTTTCTTAAAAATAAGTACAAATTTATTTGTTCGACAACACTTTTTA
Protein: 324 (aa)
MKRKTKQKAPPSQTKQVTLTQFEGDRITELANVYWTSEKKSDELLPFDPAIVQNIYENEIVKGDNRRIVMLEFNRCLENFLWPNFNENSSDQHLMSIVFLLNEKFREHIEVWKIFELNAENFPVFFNKCLHKCLEDEDVLFAKRQVVRDQTALLIFLNNCFRSMEVEICCDQVKKLVSLSMWSCLQPKRREQELSLIPEWKKYWKKLQKRDKPELKEKLEWERHFLQNLIKKFLNIVERIPAEGPINADVVCYCERFIELMIDLEALLPTRRFFNTVLDDSHLIVRCHISQLMNRPEGKLFSQVSDFFSFLKISTNLFVRQHFL
| Type | Start | End | Length |
| CDS |
6068 |
6358 |
291 |
| CDS |
6418 |
7011 |
594 |
| CDS |
7083 |
7169 |
87 |
| intron |
6359 |
6417 |
59 |
| intron |
7012 |
7082 |
71 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001989487 |
GH18832 [Drosophila grimshawi] gb|EDV92549.1| GH18832 [Drosophila grimshawi] |
1e-95 |
| InterPro |
IPR024860 |
Intron-binding protein, aquarius |
|
| Gene Ontology(BP) |
GO:0000398 |
nuclear mRNA splicing, via spliceosome |
|
| Gene Ontology(CC) |
GO:0005681 |
spliceosomal complex |
|
| Gene Ontology(MF) |
GO:0097157 |
pre-mRNA intronic binding |
|
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_10607 |
| C. quinquefasciatus |
CPIJ003435 |
| D. plexippus |
DPOGS211309PA |
| A. aegypti |
AAEL011524 |
| P. vanderplanki |
Pv.13604 |
| B. mori |
BGIBMGA004962-TA |
| H. melpomene |
HMEL002446-PA |