MidgeBase gene description page [Pn.11868]
Outline
| Gene ID | Pn.11868 |
| Type | Protein coding gene |
| Scaffold | PnScaf14704 |
| Start | 18000 |
| End | 19534 |
| Direction | - |
Sequence
Transcript: 1035 (bp)
ATGAAGTCATTCACGTCACTCTTGGTGTGCGGAACGTTCTTTATGGTTCTTCTGTGGTACAAGTTAGAATTCACAAAGACGAGCGACAAAGACTTGGACTACGACGATCAGCTGATGACTGGAATTGATACGGATTTGATGGCACTTAAAAACATCGAACACAATGCAACAATCTCAGCAGACAGCGAAAATATATTTTTTGTCGAAACGAGAAACAAAACTCGTCACTTTCTGAACGTGCGTCAGGCGTGCAGCATCGAATCTGCGGCGCTAATGAATCCTAATGCGTCGATAATTGTGACATTTGTAACACCAGAGCACTATGCGGAGCTCAACGAGACGCCATCGGTGAAGATTCTGCAGCGTGACTATGAGAACGTCAAGTTTAGGTTCGTGAATCTGGCGGAGTTCTCGAGGAACACGCCGCTCGAGAATTGGATCAAGAGTGATGAATTGAGCAATTCAGACTATGTTGTGTCACACACGTCGGACGTTCTGCGATATTTGTTGCTGTACAAATATTCGGGATTATATCTCGACACGGATGTCATCGTCACATATCCGTCGTCTCGTATAAGTATCGAGAATTATGCATGCGCCGAGAGCTCGAAATATCTCAACGGGGCCATACTGAAGCTCAGCGGTGCGAGTGGACGACAAATTGCCGAGAGCTTTATGCGAGATCTCGCAAGAAACTTTGACGGCAGTATTTGGGGAATGAACGGCCCGGAGCTGTTGACACGAGTCATTAAGAAAATGTGCAATATCTCATACTTTCGCTCGACTCAAAAGTGTAAAAACTTCACCATTCTCGAGACGGAAAAGTGCTACGGTGTCGGCTGGGGGGAATGGGAAAAGTTCTTTGAGCCGCACAGTCTTGATTACGTGAGAAAACGCACGGAGGGATCGTATTTTGTGCACCTATGGAACAAATTCAGTAAGACTCGTAAATTAGAGAAAACCTCAGATGCCGCCCTCAACGAGATCGTACGGAAATTTTGCCCTCGCATTTATGAGTCTCTCGACAATTTCTTC
Protein: 345 (aa)
MKSFTSLLVCGTFFMVLLWYKLEFTKTSDKDLDYDDQLMTGIDTDLMALKNIEHNATISADSENIFFVETRNKTRHFLNVRQACSIESAALMNPNASIIVTFVTPEHYAELNETPSVKILQRDYENVKFRFVNLAEFSRNTPLENWIKSDELSNSDYVVSHTSDVLRYLLLYKYSGLYLDTDVIVTYPSSRISIENYACAESSKYLNGAILKLSGASGRQIAESFMRDLARNFDGSIWGMNGPELLTRVIKKMCNISYFRSTQKCKNFTILETEKCYGVGWGEWEKFFEPHSLDYVRKRTEGSYFVHLWNKFSKTRKLEKTSDAALNEIVRKFCPRIYESLDNFF
| Type | Start | End | Length |
| CDS |
18003 |
18357 |
355 |
| CDS |
18456 |
18867 |
412 |
| CDS |
19267 |
19534 |
268 |
| intron |
18358 |
18455 |
98 |
| intron |
18868 |
19266 |
399 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002104977 |
GD21237 [Drosophila simulans] gb|EDX14480.1| GD21237 [Drosophila simulans] |
8e-54 |
| InterPro |
IPR007652 |
Alpha 1,4-glycosyltransferase domain |
|
| InterPro |
IPR007577 |
Glycosyltransferase, DXD sugar-binding motif |
|
| Gene Ontology(CC) |
GO:0005795 |
Golgi stack |
|
| Gene Ontology(MF) |
GO:0008378 |
galactosyltransferase activity |
|
| Pfam |
PF04488.10 |
Glycosyltransferase sugar-binding region containing DXD motif |
2e-16 |
| Pfam |
PF05704.7 |
Capsular polysaccharide synthesis protein |
0.0058 |
| Pfam |
PF04572.7 |
Alpha 1,4-glycosyltransferase conserved region |
4.2e-39 |
| Pfam |
PF12919.2 |
TcdA/TcdB catalytic glycosyltransferase domain |
0.02 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.16752 |