MidgeBase gene description page [Pn.11867]
Outline
| Gene ID | Pn.11867 |
| Type | Protein coding gene |
| Scaffold | PnScaf14704 |
| Start | 13469 |
| End | 14633 |
| Direction | - |
Sequence
Transcript: 1026 (bp)
ATGAAACGCAACACGATGATGATTCAGTTAAAGTTTAAGAAGCCAATCGCCCTCCTCGCCGGCCTTGTCGTGTTTATTGTAATTTACGGAGCACTTTTGAGCCTTCTTTCAGTCGACTGTGACCCCGCAATCATCGTCACCGATGGATTTAGCGAAATCACACACAAAATCCACTCAAATCGGAACATTTACTTCCTCGAGACACACAACTCGACCGAGCACAAGCTGACGACGAGAGCTGCGTGCTCTATTGAGTCGGCAGCTCTGATGAACCCAAACAGAAGCATTTTTGTGCTCTTCCTGTCGCCCTCAAAGCACATCCGGCTCAAAAATTGGTCGCAATTTCAGGGAATTCTCAACTACCGGAACGTCCACCTTCTTTACTTCAACACAGAAGATTTCGTCAAAGACACGGTCGTCGAGGACTGGATAAACAGAGGAACGCTTAGCGGCTCGTGGTACAAAGTTGTGCACACCTCGGACATTCTGCGCTATGCACTTCTGTACAAATATTCGGGAGTTTACCTCGATCTCGATGTCATCGTGAGAACGCCACTTGACAAGATTGAGTTTCAGAATTTCGCGTGCTTTCAAGATGACCGCGAGATTGTGAACAATGCGATCATGAAGATAAGCGATCAAGGCGGCCGAGCCCTGGGCAAAATGCTTCTCAATGAAGTGATCAGACATTTCGACGGCTTCGATTGGAGCATGAACGGACCAAAGCTGCTCACGAGAGTGCTGAAAAACTTTTGCGATGTCACAGATTTTTCTACAACCACCTCCTGCCACAACTTCACGATCCTGCCTCAAGAGCTCTGCTATCCAATCCAGTGGCAAAACTGGAACGAATTCTTCACGCAACACAACTCGGAAAAGACGATGGAGGCGCTCAAAAGTTCCCATTTCGTGCATTTTTGGAACAGAAAATCCGAATCTACGCTGGTCGAAAAATCAAGCAGAGCAGCGTTCAATCAACTCGCATCCCAGTACTGCCCGCAAGTGTACGCGACAAACGATTTAATT
Protein: 342 (aa)
MKRNTMMIQLKFKKPIALLAGLVVFIVIYGALLSLLSVDCDPAIIVTDGFSEITHKIHSNRNIYFLETHNSTEHKLTTRAACSIESAALMNPNRSIFVLFLSPSKHIRLKNWSQFQGILNYRNVHLLYFNTEDFVKDTVVEDWINRGTLSGSWYKVVHTSDILRYALLYKYSGVYLDLDVIVRTPLDKIEFQNFACFQDDREIVNNAIMKISDQGGRALGKMLLNEVIRHFDGFDWSMNGPKLLTRVLKNFCDVTDFSTTTSCHNFTILPQELCYPIQWQNWNEFFTQHNSEKTMEALKSSHFVHFWNRKSESTLVEKSSRAAFNQLASQYCPQVYATNDLI
| Type | Start | End | Length |
| CDS |
13472 |
13823 |
352 |
| CDS |
13899 |
14310 |
412 |
| CDS |
14372 |
14633 |
262 |
| intron |
13824 |
13898 |
75 |
| intron |
14311 |
14371 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFN88700 |
Lactosylceramide 4-alpha-galactosyltransferase [Harpegnathos saltator] |
9e-48 |
| InterPro |
IPR007652 |
Alpha 1,4-glycosyltransferase domain |
|
| InterPro |
IPR007577 |
Glycosyltransferase, DXD sugar-binding motif |
|
| Gene Ontology(CC) |
GO:0005795 |
Golgi stack |
|
| Gene Ontology(MF) |
GO:0008378 |
galactosyltransferase activity |
|
| Pfam |
PF04488.10 |
Glycosyltransferase sugar-binding region containing DXD motif |
1.9e-14 |
| Pfam |
PF05704.7 |
Capsular polysaccharide synthesis protein |
2.2e-05 |
| Pfam |
PF04572.7 |
Alpha 1,4-glycosyltransferase conserved region |
5.7e-37 |
| Pfam |
PF12919.2 |
TcdA/TcdB catalytic glycosyltransferase domain |
0.011 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.16753 |