MidgeBase gene description page [Pn.11863]
Outline
| Gene ID | Pn.11863 |
| Type | Protein coding gene |
| Scaffold | PnScaf14689 |
| Start | 83079 |
| End | 84758 |
| Direction | - |
Sequence
Transcript: 936 (bp)
ATGGCTGAAGAACAAGAGCATGGCGGAAAAAAGAAAAACAACATCCTACCAATCTACGGTAATCACGACTCAATGAATTTAAATCCGCTGATTCTCACGAATATACAATCCAGCGTCTATTTCAAAGTGACCTTGTTTCAGCTAAAAACGTACCATGAAGTTATTGACGAGATCTACTATCAGGTTAAGCACTTGGAACCGTGGGAAAGAGGTTCAAGAAAGACGCAAGGAAATTCGGGGATGTGCGGTTCCGTGAGGGGAGTTGGTTCAGGCGGAATAGTTAGTAGTGCTTTTTGTCTGCTCTATAAACTGTACACACTAAAGCTAACTCGCAAGCAGCTTAATGGACTTATAACGCATACGGATTCCCCATACATTCGCGCACTAGGATTCATGTATATTAGGTACACTCAACCTCCGGCTGATCTCTTTGACTGGTATGAGGAATTCCTTCAGGACGAAGAGGAAATTGATGTTCGAGCTGGAGGTGGAACTGCAATGACGATTGGTCAAATGTGCCGTCAATTCTTAACGAAACTCGACTGGTTCAGTACGCTCTTTCCTCGCATACCGGTGTCAGTACAGAAAAGTATTGAACAAAGGCTCGCTGAGTATGACCGGCAAAACGGAGTTGTTGCTCCCGTCGTAGTTCAACCTGAGAGACGAGAAAGGGAGCGATTCGAACGAAACGAACGTGAAGAACGTCCAGCAAAGGATTATCGTAACGAGAGAAAACGATCTCGAACACCCGATAGACGCTTCAGAAATGACTACGACGATGACAGCAAACATTCACACAGAGATCGCGAAAAAAATTCAAGTAAATCAGCCAAGTATTACCGAGATCGTTCACGATCGCGCTCGAAGGAGAGACGAGAACGAGACCGAGATAGAAGAAGATATGACTATGACGATGCAAGAAGCTCCCGACGATAT
Protein: 312 (aa)
MAEEQEHGGKKKNNILPIYGNHDSMNLNPLILTNIQSSVYFKVTLFQLKTYHEVIDEIYYQVKHLEPWERGSRKTQGNSGMCGSVRGVGSGGIVSSAFCLLYKLYTLKLTRKQLNGLITHTDSPYIRALGFMYIRYTQPPADLFDWYEEFLQDEEEIDVRAGGGTAMTIGQMCRQFLTKLDWFSTLFPRIPVSVQKSIEQRLAEYDRQNGVVAPVVVQPERRERERFERNEREERPAKDYRNERKRSRTPDRRFRNDYDDDSKHSHRDREKNSSKSAKYYRDRSRSRSKERRERDRDRRRYDYDDARSSRRY
| Type | Start | End | Length |
| CDS |
83082 |
83622 |
541 |
| CDS |
83692 |
83795 |
104 |
| CDS |
83891 |
83933 |
43 |
| CDS |
84150 |
84270 |
121 |
| CDS |
84526 |
84636 |
111 |
| CDS |
84743 |
84758 |
16 |
| intron |
83623 |
83691 |
69 |
| intron |
83796 |
83890 |
95 |
| intron |
83934 |
84149 |
216 |
| intron |
84271 |
84525 |
255 |
| intron |
84637 |
84742 |
106 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001846086 |
PRP38 pre-mRNA processing factor 38 domain containing B [Culex quinquefasciatus] gb|EDS42441.1| PRP38 pre-mRNA processing factor 38 domain containing B [Culex quinquefasciatus] |
7e-87 |
| InterPro |
IPR005037 |
Pre-mRNA-splicing factor 38 |
|
| Pfam |
PF03371.10 |
PRP38 family |
6.5e-55 |
| Pfam |
PF00149.23 |
Calcineurin-like phosphoesterase |
0.15 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV18462-PA |
| H. sapiens |
ENSP00000359038 |
| S. invicta |
SI2.2.0_06871 |
| D. melanogaster |
FBgn0030468 |
| H. sapiens |
ENSP00000359042 |
| P. humanus |
PHUM210830-PA |
| M. musculus |
ENSMUSG00000027881 |
| B. mori |
BGIBMGA007945-TA |
| A. aegypti |
AAEL017400 |
| D. plexippus |
DPOGS208839PA |
| H. melpomene |
HMEL015432-PA |
| T. castaneum |
TC004390 |
| A. gambiae |
AGAP004698 |
| P. vanderplanki |
Pv.07612 |
| C. quinquefasciatus |
CPIJ004500 |
| A. mellifera |
GB13027-PA |