MidgeBase gene description page [Pn.11862]
Outline
| Gene ID | Pn.11862 |
| Type | Protein coding gene |
| Scaffold | PnScaf14689 |
| Start | 79309 |
| End | 81426 |
| Direction | + |
Sequence
Transcript: 1872 (bp)
ATGAATACTACACAGCGAAATGGATCATCGGCAACAACAAACAATTCCTCGCAACAGCCTTCATCAACACGACAATTGGGTATGACTTCGGCAATTTCACTTGCCATGCCTAAACCAGAAGACATTCAAAGGACGAAGGACCTTGAGCGTACACTTGAACCGTATAATGTTTTCGAAAGCGAACAAGAACTCAATCACCGTATGGAGATATTGGCAAAGCTCAACACACTCGTCAAGCAGTGGGTTAAGGATGTGTCGATCAAGAAAAACATGCCCGAACAAATGACTGAGAAGCTCGGCGGCAAAATTTACACATTCGGTTCGTATCGGTTAGGCGTTCATCAGAGAAGTGCCGATATTGATGCACTTTGTGTGGCTCCAAGAAACATCGAACGAACCGATTACTTTACGTCCTTCTTTGAACTCCTCAAACAGCAATCTGAAGTAACAGAGTGTCGTGCCGTCGAAGAAGCTTTTGTGCCGGTCATTAAAATGAATTTTGACGGTATCGAAATAGATTTGCTTTTTGCACGACTGGCATTGAAGGAAATTCCTGACAATTTCGATCTCCGTGACGACATGCTACTGAAAAATCTAGACCCACGCTGCGTCCGATCCCTCAATGGCTGCCGCGTGACTGACGAAATTCTTCGTCTCGTTCCAAACATCGAAAATTTCCGACTCGCATTGCGAGCTATCAAATTGTGGGCAAAAAAGCACGGAATTTATTCGAATTCTTTGGGTTATTTCGGCGGTGTTTCGTGGGCTATGCTGGTTGCAAGAACATGTCAACTCTATCCGAATGCTGCAGCCGCAACACTTGTTCATAAATTCTTTTTAGTATTCTCTCGATGGAAGTGGCCTCAGCCTGTCCTTCTCAAGCAACCCGACAACGTTAATTTGGGCTTCACGGTGTGGGATCCGCGTATCAACGCGCAAGACAGATATCATCTCATGCCAATTATTACACCTGCATACCCGCAACAGAATTCAACGTTCAACGTTTCAATCTCCACATCCAAAGTCATTCAAAATGAGTTCAAAGAGGGAATGGAAATAACTGATGAAATTATGTTAGGAAAGGCTGATTGGGATAAGCTGTTCCAGCCACCGAATTTTTTCACAAAATATCGACACTTTATTGTTCTCCTGGTAAGTTCTTCGACTGCCGATGATCATCTAGAGTGGTGTGGCTTGATTGAATCAAAAATTCGCATTCTCATCGGAAATTTGGAACGAAATCAGCACATAAATCTTGCTCACGTCAATCCAAAGTGCTTTGAAAAATCTACGGGTAGTGCTAAGGAGAAGGGGAGTAATGCAGCGGCTGCAATTAATAAGACACCGACAACGCCCGTTAGCGAAAAGAGTGAAAACGAAAGTGAAAAGAGTGAGAAAAGTGAGACTCCAAACGATAGTGAGGAAGCGTCAAATGAGTCCGAGTTCTGCTCAATGTGGTTCATTGGACTCGAATTCGAACGATCTGCTAATCTTAAGGTCGATCTTACAGTTGGTATTCAATCATTCACCGACTCCGTTCACAAACATGCTCTCAATATTAAAATGCTTAAGGAAGGAATGAAGATTGAAGCTCGCCATGTTCGACGCAAACAGTTGTCACAGTACATAGATATAAATTATGTTAAGAAGGAGCGCAAAATGTCAGAGACACTAAACAGTTCTTCATCCTCAATAATGCAATTAGCTAAGAAACGACTTTCAGCGGAGACAAGTCTCAATAGTAGTAACCCGAAGCGAATGAAACTTCATGAATCTTTTGACAGCACCAATGATTCAACTAATGAACCCTTGCTAGACGATTCCATACCAGCAGATACACCAGCAAAAGCAGGAGCTACGGAAATTTGCACG
Protein: 624 (aa)
MNTTQRNGSSATTNNSSQQPSSTRQLGMTSAISLAMPKPEDIQRTKDLERTLEPYNVFESEQELNHRMEILAKLNTLVKQWVKDVSIKKNMPEQMTEKLGGKIYTFGSYRLGVHQRSADIDALCVAPRNIERTDYFTSFFELLKQQSEVTECRAVEEAFVPVIKMNFDGIEIDLLFARLALKEIPDNFDLRDDMLLKNLDPRCVRSLNGCRVTDEILRLVPNIENFRLALRAIKLWAKKHGIYSNSLGYFGGVSWAMLVARTCQLYPNAAAATLVHKFFLVFSRWKWPQPVLLKQPDNVNLGFTVWDPRINAQDRYHLMPIITPAYPQQNSTFNVSISTSKVIQNEFKEGMEITDEIMLGKADWDKLFQPPNFFTKYRHFIVLLVSSSTADDHLEWCGLIESKIRILIGNLERNQHINLAHVNPKCFEKSTGSAKEKGSNAAAAINKTPTTPVSEKSENESEKSEKSETPNDSEEASNESEFCSMWFIGLEFERSANLKVDLTVGIQSFTDSVHKHALNIKMLKEGMKIEARHVRRKQLSQYIDINYVKKERKMSETLNSSSSSIMQLAKKRLSAETSLNSSNPKRMKLHESFDSTNDSTNEPLLDDSIPADTPAKAGATEICT
| Type | Start | End | Length |
| CDS |
79309 |
80023 |
715 |
| CDS |
80139 |
80974 |
836 |
| CDS |
81041 |
81265 |
225 |
| CDS |
81328 |
81423 |
96 |
| intron |
80024 |
80138 |
115 |
| intron |
80975 |
81040 |
66 |
| intron |
81266 |
81327 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650777 |
poly a polymerase [Aedes aegypti] gb|EAT43186.1| poly a polymerase [Aedes aegypti] |
0.0 |
| InterPro |
IPR014492 |
Poly(A) polymerase |
|
| InterPro |
IPR007012 |
Poly(A) polymerase, central domain |
|
| InterPro |
IPR011068 |
Nucleotidyltransferase, class I, C-terminal-like |
|
| InterPro |
IPR002934 |
Nucleotidyl transferase domain |
|
| InterPro |
IPR007010 |
Poly(A) polymerase, RNA-binding domain |
|
| Gene Ontology(BP) |
GO:0031123 |
RNA 3'-end processing |
|
| Gene Ontology(BP) |
GO:0043631 |
RNA polyadenylation |
|
| Gene Ontology(BP) |
GO:0006351 |
transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0004652 |
polynucleotide adenylyltransferase activity |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Gene Ontology(MF) |
GO:0016779 |
nucleotidyltransferase activity |
|
| Pfam |
PF01909.18 |
Nucleotidyltransferase domain |
2.1e-07 |
| Pfam |
PF04926.10 |
Poly(A) polymerase predicted RNA binding domain |
3.3e-41 |
| Pfam |
PF04928.12 |
Poly(A) polymerase central domain |
8.2e-156 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000450534 |
| H. sapiens |
ENSP00000238714 |
| M. musculus |
ENSMUSG00000074817 |
| T. castaneum |
TC003818 |
| N. vitripennis |
NV50842-PA |
| H. sapiens |
ENSP00000384700 |
| C. quinquefasciatus |
CPIJ006529 |
| B. mori |
BGIBMGA000084-TA |
| N. vitripennis |
NV50843-PA |
| N. vitripennis |
NV50084-PA |
| C. quinquefasciatus |
CPIJ012940 |
| H. sapiens |
ENSP00000405570 |
| P. vanderplanki |
Pv.07611 |
| C. quinquefasciatus |
CPIJ002045 |
| P. humanus |
PHUM586240-PA |
| S. invicta |
SI2.2.0_14294 |
| D. plexippus |
DPOGS205534PA |
| C. quinquefasciatus |
CPIJ014836 |
| A. mellifera |
GB11344-PA |
| D. melanogaster |
FBgn0015949 |
| A. gambiae |
AGAP013207 |
| M. musculus |
ENSMUSG00000021111 |
| C. quinquefasciatus |
CPIJ011744 |
| H. melpomene |
HMEL011287-PA |
| N. vitripennis |
NV50448-PA |
| C. quinquefasciatus |
CPIJ004584 |
| H. sapiens |
ENSP00000216277 |
| H. sapiens |
ENSP00000450437 |
| H. sapiens |
ENSP00000376716 |
| A. aegypti |
AAEL005356 |
| C. quinquefasciatus |
CPIJ016239 |
| N. vitripennis |
NV18726-PA |