MidgeBase gene description page [Pn.11844]
Outline
| Gene ID | Pn.11844 |
| Type | Protein coding gene |
| Scaffold | PnScaf14686 |
| Start | 24109 |
| End | 28336 |
| Direction | - |
Sequence
Transcript: 3360 (bp)
ATGGCTGACGACACACAGTTTTCAAGTTTGCTCTCTTCCCTGCTCTCAATAGATAACGATGCAAGAACTCAAGCAGAGGAAGCCTACAACAACTTGACAACTGAAGTAAAAGTTAGTCTTCTACTACGCGCTGTGCAAAATGTTCAAGCCTCGGAAGAAGCACGGTTAATGGCTGCGGTACTCTTGAGAAGAGTATTTTCGTCGGATTTTCAGGATTTCTTTCCCAAGTTACCGGTAGAACAACAGACCGAACTGAAACAGCAAATTCTTTTGTTACTCCAACAAGATGTCAGTGCCAATTTGCGGAGAAAGATTTGTGAAGTAGTGGCAGAAGTTACTCGCAATCTTATCGACGATGAGGGAAACAACCAGTGGCCCGAAACTCTTCAACTCCTTTTTCAATGCGCCAACGCTCCAAATCCGCTGTTTCAAGAGTCAGCACTGCGCATTTTCGCATCGGTGCCAGGAATTTTCGGCAATCAGCAAAATCATTATTTGCCGGTCATAAAAGATATGCTCATGAAATACCTTGACCCATCATCAAGCGAAGATGTTCGTTTCCAAGCAGTTCGTGCGGTCGTTGCGTTTATTCTACTTCACGACAAGGAAGTCGAAATTCAAAAGGCCTTCTCGGACTTACTTCCACACGTGATCATGATCATCGCCGAGTCGATTAAGCAGGAGGAAGATCAAACGCTCATCAAGCTACTCATCGACATGACCGAAACTGTTCCGAAGTTCCTTCGTCCACAGTTGGAGGCTATTTTCGAGATGTGCATCAACGTGTTAAGAAGTGATTTAGTGGAAGACACTTGGAGACATTTGGCACTGGAAGTTATGGTCTCTCTATCAGAAAATGCAGCTGCTATGGTCAGGAAGAAGGCCGACAAATATATCGCCACACTGGTACCGCTCATCCTCAAAATGATGACTGACTTGTTTGACGACGACGAATGGGCAGTTTCGGACGAGATTGACGACGATGACACCGGCGACAACAATGTCATTGCGGAATCGGCCCTTGATCGTTTGGCTTGCGGTCTCGGAGGAAAGGCAATTCTTCCACACATTGTCTCAAACATTCCAACAATGTTGAATAATCCCGATTGGAAGCATCGTCATGCCGCTCTCATGGCAATTAGTGCAGCAGGAGAGGGCTGTCACAAGCAGATGGAAACCATGCTTGAAAGCATCACTGAAGGAACATTGAAATACCTGATCGATCCGCATCCGCGTGTTCGTTATGCTGCGTGCAATGCCATCGGACAAATGGCGACAGATTTTGCTCCGATTTTCGAAAAGAAGTTCCATCATCAAGTTATTCCCGGTTTATTGACTCTCCTCGATGATCACGCGAACCCGCGGGTTCAGGCTCACGCCGGCGCCGCCCTCGTCAATTTCAGCGAAGATTGTCCAAAGACCATTCTCACGCGCTATCTTGATGCAATCATGAGCAAACTGGAGGCAATTCTAACCGCAAAGTTCAACGAACTCGTTGAAAAGGGCACCAAACTTGTGTTGGAGCAGGTCGTTACCACAATTGCGAGCGTCGCCGACACAACTGAAAAAGATTTTGTCGTTTACTACGACCGTCTCATGCCATGCTTGAAGTATTTAATTGCAAACGCTAATACTGACGAATTGAAAATGTTACGAGGCAAAACGATCGAGTGTGTTAGTTTGATTGGACTCGCTGTCGGAGCGGAAAAGTTCATGGCGGACGCGAGCGAAGTGATGGATATGCTTTTGAAAACTCACACCGAAGGCAACCTACCGGACGATGATCCCCAGACGACCTACCTGATTTCCGCATGGGCTCGAATTTGTAAAATTCTCGGCAAGCAATTCGAACAGTATTTGCCACTCGTCATGGGACCAGTAATGAAAACGGCAGCAATGAAACCCGAGGTTGCAGTCTTGGACAACGACGAAATTGAAGATGTCGAATCCGATCCGGACTGGCAGTTTGTCAATTTGAGCGACCAGCAAAACTTTGGAATTCGCACAGCTGGCCTAGAGGACAAAGCTGCTGCCTGCGAAATGCTCGTCTGTTATGCCCGTGAATTGAAAGAGGGCTTCGCCAACTACGCAGAGGAGGTTGTTAGGCTCATGGTGCCGATGTTTAAATTCTATTTCCACGACGGCGTTCGTCGAGCTGCAGCGGAATCGCTTCCACATCTCTTGGTGTGTGCGAAAATCAAAGGCGCACAATATCTCGAGAGCATGTGGGCCTACATTTGCCCCGAACTGCTAAAGGCCATCGAAACGGAACCGGAAGCTGAGGTGATTGCTGAGCTGTTGCAATCGCTTGCGAAATGCATTGAGACACTCGGTGCCAATTGCTTGTCGCAAGAGGCCATGGCAGAGGTCCTCAAAATCATCAATCGATTCATGAATGAACACTTCGAGAAGGCAGACAAACGCGCGCAGGCACGAAACGAGGAGGACTACGATGAGGCAGTCGAGGAACAACTGGCCGAAGAAGATGAGACCGATGTGTACCTGCTATCACGCATTGCGAACATCATTCATTCCCTATTTATGACACAGAAAGTCTCATTTTTGCCTTATTTCGAGCAAATTGCGCCGCATTTTATCAAACTTCTGGATCCAACTCGTCCGTCTTGGTCCGATAGGCAATGGGGTCTTTGCATTTTCGATGATCTTATCGAATTTTGCGGACCAGCATGTGCACAATATCAGTCCTATTTTCTGCAATCAATGATTCAATACTGTAAAGATAAGCAACCGGAGGTGAGACAGGCTGCAATGTACGGATGCGGAATATTAGCTCAATTTGGAGGCGAGCAGTTTGCACAAACCTGCTCGATGTTTATGCCGATTCTGATAGAAGCTATTATTGCACCGGATGCTCGAGATCCTGAAAATATGACTGTAACGGAGAACGCTATCTCAGCAGTAGCAAAGATAATGAAATACAACAGCTCTGCCATCACCAATGGCGACGAAATTATAAATATATGGTTTCAAAGTTTGCCAGTAACGGAAGACGACGAGGAGGCGCCGCATATTTATGGGTATTTGTGTGATTTAATTCAATCAAATCATCCCATAATCTTGGGCAATAACAATAGCAACTTACCTCGCATTGTTGCACTCATCGGTGATGCTTTTCATCATGGTGTCATACAGATTATAACTCCTACAAACGATAATATAGACAACATGCGATTAGACTATGTTCAACAAAACAATGACGTAGCCGGACGTATGCTCAACATTGTGAAGCAAATTCAATCAAATGCACCGGTCTTTAACGCTTGCATTCAGATCATCAATGAGCAGCAGAAGAGCGCATTGGAGGAGGCCATGAAGAGCTTTGCAAATATAACAGTTGCA
Protein: 1120 (aa)
MADDTQFSSLLSSLLSIDNDARTQAEEAYNNLTTEVKVSLLLRAVQNVQASEEARLMAAVLLRRVFSSDFQDFFPKLPVEQQTELKQQILLLLQQDVSANLRRKICEVVAEVTRNLIDDEGNNQWPETLQLLFQCANAPNPLFQESALRIFASVPGIFGNQQNHYLPVIKDMLMKYLDPSSSEDVRFQAVRAVVAFILLHDKEVEIQKAFSDLLPHVIMIIAESIKQEEDQTLIKLLIDMTETVPKFLRPQLEAIFEMCINVLRSDLVEDTWRHLALEVMVSLSENAAAMVRKKADKYIATLVPLILKMMTDLFDDDEWAVSDEIDDDDTGDNNVIAESALDRLACGLGGKAILPHIVSNIPTMLNNPDWKHRHAALMAISAAGEGCHKQMETMLESITEGTLKYLIDPHPRVRYAACNAIGQMATDFAPIFEKKFHHQVIPGLLTLLDDHANPRVQAHAGAALVNFSEDCPKTILTRYLDAIMSKLEAILTAKFNELVEKGTKLVLEQVVTTIASVADTTEKDFVVYYDRLMPCLKYLIANANTDELKMLRGKTIECVSLIGLAVGAEKFMADASEVMDMLLKTHTEGNLPDDDPQTTYLISAWARICKILGKQFEQYLPLVMGPVMKTAAMKPEVAVLDNDEIEDVESDPDWQFVNLSDQQNFGIRTAGLEDKAAACEMLVCYARELKEGFANYAEEVVRLMVPMFKFYFHDGVRRAAAESLPHLLVCAKIKGAQYLESMWAYICPELLKAIETEPEAEVIAELLQSLAKCIETLGANCLSQEAMAEVLKIINRFMNEHFEKADKRAQARNEEDYDEAVEEQLAEEDETDVYLLSRIANIIHSLFMTQKVSFLPYFEQIAPHFIKLLDPTRPSWSDRQWGLCIFDDLIEFCGPACAQYQSYFLQSMIQYCKDKQPEVRQAAMYGCGILAQFGGEQFAQTCSMFMPILIEAIIAPDARDPENMTVTENAISAVAKIMKYNSSAITNGDEIINIWFQSLPVTEDDEEAPHIYGYLCDLIQSNHPIILGNNNSNLPRIVALIGDAFHHGVIQIITPTNDNIDNMRLDYVQQNNDVAGRMLNIVKQIQSNAPVFNACIQIINEQQKSALEEAMKSFANITVA
| Type | Start | End | Length |
| CDS |
24112 |
24487 |
376 |
| CDS |
24697 |
25009 |
313 |
| CDS |
25225 |
27667 |
2443 |
| CDS |
27740 |
27889 |
150 |
| CDS |
28259 |
28336 |
78 |
| intron |
24488 |
24696 |
209 |
| intron |
25010 |
25224 |
215 |
| intron |
27668 |
27739 |
72 |
| intron |
27890 |
28258 |
369 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001859032 |
importin beta-3 [Culex quinquefasciatus] gb|EDS35015.1| importin beta-3 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR011989 |
Armadillo-like helical |
|
| InterPro |
IPR016024 |
Armadillo-type fold |
|
| Gene Ontology(MF) |
GO:0005488 |
binding |
|
| Pfam |
PF12755.2 |
Vacuolar 14 Fab1-binding region |
5.2e-12 |
| Pfam |
PF00514.18 |
Armadillo/beta-catenin-like repeat |
9.8e-06 |
| Pfam |
PF03810.14 |
Importin-beta N-terminal domain |
0.0049 |
| Pfam |
PF02985.17 |
HEAT repeat |
1.6e-21 |
| Pfam |
PF13251.1 |
Domain of unknown function (DUF4042) |
9.5e-05 |
| Pfam |
PF03130.11 |
PBS lyase HEAT-like repeat |
0.0068 |
| Pfam |
PF08167.7 |
rRNA processing/ribosome biogenesis |
6.1e-09 |
| Pfam |
PF13513.1 |
HEAT-like repeat |
2.4e-11 |
| Pfam |
PF13646.1 |
HEAT repeats |
1.1e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV11160-PA |
| H. sapiens |
ENSP00000418393 |
| H. sapiens |
ENSP00000419764 |
| B. mori |
BGIBMGA003361-TA |
| H. sapiens |
ENSP00000259569 |
| H. sapiens |
ENSP00000445126 |
| S. invicta |
SI2.2.0_12652 |
| D. plexippus |
DPOGS208715PA |
| H. sapiens |
ENSP00000261574 |
| H. melpomene |
HMEL015263-PA |
| M. musculus |
ENSMUSG00000030662 |
| P. vanderplanki |
Pv.02000 |
| T. castaneum |
TC013052 |
| D. melanogaster |
FBgn0087013 |
| P. humanus |
PHUM075940-PA |
| A. mellifera |
GB18198-PA |
| C. quinquefasciatus |
CPIJ010329 |
| A. aegypti |
AAEL010159 |
| A. gambiae |
AGAP003769 |
| M. musculus |
ENSMUSG00000074909 |
| H. sapiens |
ENSP00000350219 |