MidgeBase gene description page [Pn.11842]
Outline
| Gene ID | Pn.11842 |
| Type | Protein coding gene |
| Scaffold | PnScaf14686 |
| Start | 20207 |
| End | 21249 |
| Direction | - |
Sequence
Transcript: 495 (bp)
ATGGACACAACTGCATCACTTCTCTTGAAAAAGCAATTAGCAGAGCTCAATAAGCATCCAGTAGAAGGTTTCTCGGCAGGTCTTGTTGATGACAATGATATTTTCAAATGGGAAGTACTGATAATAGGACCTCCAGATACTCTGTATGAAGGCGGATTCTTCAAAGCTCATCTCTACTTCCCAAAAGAATATCCTCTGAGACCTCCTCGCATGCGTTTCGTCACAGAAATTTGGCATCCGAATATTGATCAAAATGGAGATGTTTGCATCAGTATCTTGCACGAACCAGGTGATGATAAGTGGGGCTACGAGAAGGCATCAGAGCGTTGGCTTCCGGTGCATACAGTCGAAACGATTATAATTTCCGTTATATCAATGTTAGCCGAACCGAATGACGAATCACCAGCAAATGTAGACGCAGCGAAGCAATGGCGAGAAGCCTATCCAGAATTCAAGAGACGGGTAGCCCGTTGTGTTCGCAAGAGTCAGGAGGAA
Protein: 165 (aa)
MDTTASLLLKKQLAELNKHPVEGFSAGLVDDNDIFKWEVLIIGPPDTLYEGGFFKAHLYFPKEYPLRPPRMRFVTEIWHPNIDQNGDVCISILHEPGDDKWGYEKASERWLPVHTVETIIISVISMLAEPNDESPANVDAAKQWREAYPEFKRRVARCVRKSQEE
| Type | Start | End | Length |
| CDS |
20210 |
20442 |
233 |
| CDS |
20526 |
20621 |
96 |
| CDS |
20693 |
20722 |
30 |
| CDS |
20985 |
21053 |
69 |
| CDS |
21183 |
21249 |
67 |
| intron |
20443 |
20525 |
83 |
| intron |
20622 |
20692 |
71 |
| intron |
20723 |
20984 |
262 |
| intron |
21054 |
21182 |
129 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADD20014 |
ubiquitin protein ligase [Glossina morsitans morsitans] |
1e-85 |
| InterPro |
IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
|
| InterPro |
IPR000608 |
Ubiquitin-conjugating enzyme, E2 |
|
| InterPro |
IPR023313 |
Ubiquitin-conjugating enzyme, active site |
|
| Gene Ontology(MF) |
GO:0016881 |
acid-amino acid ligase activity |
|
| Pfam |
PF00179.21 |
Ubiquitin-conjugating enzyme |
1.7e-51 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0058045 |
| A. gambiae |
AGAP002251 |
| H. sapiens |
ENSP00000380178 |
| T. castaneum |
TC014980 |
| C. quinquefasciatus |
CPIJ013524 |
| A. aegypti |
AAEL010798 |
| D. plexippus |
DPOGS207065PA |
| H. melpomene |
HMEL010199-PA |
| S. invicta |
SI2.2.0_16053 |
| M. musculus |
ENSMUSG00000020794 |
| A. mellifera |
GB13798-PA |
| P. humanus |
PHUM607380-PA |
| N. vitripennis |
NV11751-PA |
| P. vanderplanki |
Pv.01998 |