MidgeBase gene description page [Pn.11831]
Outline
| Gene ID | Pn.11831 |
| Type | Protein coding gene |
| Scaffold | PnScaf14658 |
| Start | 339 |
| End | 2242 |
| Direction | - |
Sequence
Transcript: 1536 (bp)
ATGTTTTTATTCGCTTTCTTAAAAAAAGGCTCAGGATTCATGGGGAAAGTTTTTATTGAGAGATTACTGCGCCTAACTGAATTCCAAAGAATTTACATACTCATCAGACCAAAGAAGGGAGTTCAACCCGAGCAACGATTGAAAGAACTCTTCAAAGACATAATTTTTGAAAAGTTATTGCAAGACATGAATGTCGATACAATTTTGGACAAAGTAAAGGCTATCAGTGGCGACTGTGAACAACTCAACTTGGGCTTATCGGAAAATGACCGGAATTTCATAATCGAAAACATGACAATGATTTATCACTATGCGGCTACGATTCGCTTCGACGAAAAGTTGAAGAAAGCTGTCTTAATGAATGTTCGCGGCACACGAGAAGTTATAAACCTCGCTCTCGAATGTAAAAAGTTAAAATTTTTCGGCCATATGTCTACTGCGTATTGTCATCTTCACGTATCATTCTTGCTAGAAAAGCCATACGATCCACCAGCAGATCCTTATGAAATTATAAAGTTAATTGAAGATAAGGCAGATACATCTGAAGAAGAAATCGAAATTTTTTCAAAAGTTTTGCTTGCGAAATTCAATCTACCAAATACGTATGCATTCACAAAGGCTTTGGCTGAGAGCATGGTAGTGAGAGCTAAGCAGAAGCAAAACTTGCCTGCAATGATTTTCCGTCCGTCAATCGTTATTTCAACGTGGCGTGATCCAATTCCCGGGTACATCGATAACTTTAACGGACCAGTTGGCATGCTTCTTGCTGGAGGGAAAGGAGTTGCACGAACTGTTTATTGTGACCAAAAGAGTTATGGCGACTTTATGCCATGTGACATTGCCATTAACGGTGTGTTTGTGTGTACATGGAATTTCTTCAATTATTACAATCCGGATCATTTCATCATCAATTTTACGAGTTCTCAAGAGATTCAATTTTCATGGGAGCAGGTCAGTAAACTGGGAATGCTTGTTGCCGAGCAAAAATATCCGTTGAATCAAATATTTTGGTATCCAAATTGTGCAATGACAAAGTACCGTTGGCTTCATAATGTTCGGGCTTTCTTCTTTCATTGGATACCTGCCTACATAACTGACTTCTTCCTAGCTCGCTTTGGCTATGAACCATTCATGAAACGTGCAGCAAGAAGAATCGCCAAGGGCATGGAAGTCGTTGAATATTATGCAAATAATCAATGGGATTTTGATAATAAAATTCAGTGTGCATTTCGGGAACGTCTAAATGACTTTGAAGAAGATAGATATAAGGTGAATTCAAGAGGAATAAGTCTTCAGCAAATATTGACCGATGCCGCTTTGGGTTGTCGAAGATATGTTTTGAAAACTCCCGATCACATGCTACCCGCTGCGTTCAGTGAGATGAGAAGGATGTACATTATTGACAAAATTTGCAAAACACTTATCTATGGAGTCCTGTTGTATTGGCTTTATGGATTAGTTTTATCACTTATATCAGGCAGCAATCTGTTTTTGAGTATCGTTAAGCTTTTCATTTGTATATTTCTTTTCATTCTT
Protein: 512 (aa)
MFLFAFLKKGSGFMGKVFIERLLRLTEFQRIYILIRPKKGVQPEQRLKELFKDIIFEKLLQDMNVDTILDKVKAISGDCEQLNLGLSENDRNFIIENMTMIYHYAATIRFDEKLKKAVLMNVRGTREVINLALECKKLKFFGHMSTAYCHLHVSFLLEKPYDPPADPYEIIKLIEDKADTSEEEIEIFSKVLLAKFNLPNTYAFTKALAESMVVRAKQKQNLPAMIFRPSIVISTWRDPIPGYIDNFNGPVGMLLAGGKGVARTVYCDQKSYGDFMPCDIAINGVFVCTWNFFNYYNPDHFIINFTSSQEIQFSWEQVSKLGMLVAEQKYPLNQIFWYPNCAMTKYRWLHNVRAFFFHWIPAYITDFFLARFGYEPFMKRAARRIAKGMEVVEYYANNQWDFDNKIQCAFRERLNDFEEDRYKVNSRGISLQQILTDAALGCRRYVLKTPDHMLPAAFSEMRRMYIIDKICKTLIYGVLLYWLYGLVLSLISGSNLFLSIVKLFICIFLFIL
| Type | Start | End | Length |
| CDS |
342 |
489 |
148 |
| CDS |
556 |
813 |
258 |
| CDS |
878 |
995 |
118 |
| CDS |
1064 |
1188 |
125 |
| CDS |
1244 |
1379 |
136 |
| CDS |
1439 |
1712 |
274 |
| CDS |
1766 |
2242 |
477 |
| intron |
490 |
555 |
66 |
| intron |
814 |
877 |
64 |
| intron |
996 |
1063 |
68 |
| intron |
1189 |
1243 |
55 |
| intron |
1380 |
1438 |
59 |
| intron |
1713 |
1765 |
53 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADI82776 |
fatty-acyl CoA reductase 3 [Ostrinia nubilalis] |
1e-138 |
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
9.6e-08 |
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
9.5e-05 |
| Pfam |
PF03015.14 |
Male sterility protein |
2.8e-16 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.13 |
| Pfam |
PF07993.7 |
Male sterility protein |
8.7e-63 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.12741 |
| Pn.14013 |
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ000104 |
| D. plexippus |
DPOGS211702PA |
| D. melanogaster |
FBgn0033464 |
| T. castaneum |
TC015379 |
| T. castaneum |
TC015576 |
| A. gambiae |
AGAP005515 |
| A. aegypti |
AAEL013648 |
| P. vanderplanki |
Pv.03328 |
| P. vanderplanki |
Pv.06356 |
| T. castaneum |
TC015335 |
| S. invicta |
SI2.2.0_03625 |
| P. humanus |
PHUM288740-PA |
| B. mori |
BGIBMGA011148-TA |
| A. mellifera |
GB13695-PA |
| P. vanderplanki |
Pv.06355 |
| N. vitripennis |
NV15381-PA |