MidgeBase gene description page [Pn.11804]
Outline
| Gene ID | Pn.11804 |
| Type | Protein coding gene |
| Scaffold | PnScaf14603 |
| Start | 17146 |
| End | 17910 |
| Direction | - |
Sequence
Transcript: 762 (bp)
ATGGAAAAGTGGCGCGGAAAAATCGCCGTCGTGAGCGGCGCATCTGCAGGCATCGGAGCTGCAGTTTTACGAGACTTAGCAAGTCATGGACTCACAGTAATTGGTCTCGCGAGAAGACTCGAAAAAATCGAAGCAATTGCGGAGGAGTGCAAGCATCTCGACGGCAAAATCGTCGCCCGAAAATGCGACATCTCCGACCAAAAGTCACTGAAGGAAGCGTTCGCGTGGGTCGAAGAAAATTACTCGGTAATCCACATTTTAATTAACAACGCGGGCATATTGCATAAATTGAGCGTTTTGGACGGCAGCGACGACGCCGCCGATAAGATTAACAGTGTTATCAACACAAATTTCACCGGTGCAGTTCACTGTGTGAGAGAGGCCGCCCGGCTGATGAAGAAGGCCGACGATTTTGCGATGATTGTCAACGTAAACTCAATCGCAGGTCACAGCGTGTACGCAGGCTTGCACATCTCGAACGTTTACTCGCCGACGAAGCACGCGCTCACGGCTTTCAGTGAAATCTTGCGGCAAGAACTCGTCGCCAGCGGAAACGACAAAATTCGCGTGTCAAATCTGAGTCCGGGCGTAGTGAGAACTGAGATTATGGTCAGAGGTAAGGCTTTCGAGTCAGACAGCGATTATGACAGTGTTCCTCATATCAGCCCCGAGGACATTTCGAGTGGAGTTTTATATCTCTTATCGACACCGTACAACGTGAATGTCACACAACTTACGATCAAACCAGTCGGCGAGAAAAAA
Protein: 254 (aa)
MEKWRGKIAVVSGASAGIGAAVLRDLASHGLTVIGLARRLEKIEAIAEECKHLDGKIVARKCDISDQKSLKEAFAWVEENYSVIHILINNAGILHKLSVLDGSDDAADKINSVINTNFTGAVHCVREAARLMKKADDFAMIVNVNSIAGHSVYAGLHISNVYSPTKHALTAFSEILRQELVASGNDKIRVSNLSPGVVRTEIMVRGKAFESDSDYDSVPHISPEDISSGVLYLLSTPYNVNVTQLTIKPVGEKK
| Type | Start | End | Length |
| CDS |
17149 |
17910 |
762 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002055198 |
GJ18924 [Drosophila virilis] gb|EDW65399.1| GJ18924 [Drosophila virilis] |
2e-54 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
0.0023 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
8.4e-10 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
1.8e-05 |
| Pfam |
PF03435.13 |
Saccharopine dehydrogenase |
0.0012 |
| Pfam |
PF05368.8 |
NmrA-like family |
0.0021 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
2e-25 |
| Pfam |
PF08659.5 |
KR domain |
1.4e-10 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.01043 |