MidgeBase gene description page [Pn.11742]
Outline
| Gene ID | Pn.11742 |
| Type | Protein coding gene |
| Scaffold | PnScaf14345 |
| Start | 6975 |
| End | 8315 |
| Direction | + |
Sequence
Transcript: 1083 (bp)
ATGGTCATTAATTTCGCCGCCGGTCCCGCAAAGCTTCCAGATGAGGTGCTCAAAGAGGTGCAGCAAGAGCTCCTCAACTACCAAGGAAGCGGAATGTCGGTGATGGAGATGTCGCACCGAGGCGGCGTGTACACGAAAATCCACGAAGATGCGATAAAGTCGTGTCGAGAGCTGCTAAACATTCCTGATAACTATAAAGTGCTGTTTATGCAAGGCGGCGGAACCGGTCAGTTTGCGGCAGTGTGCATGAATCTTATGGGCAAAACTGGAACTGCCGACTACCTGGTGACCGGTTCGTGGTCGCTCAAGGCCTTCAAAGAGGCGCAAAAATACGGCACTCCGAATCTCGTCTTCCCCAAGCCCGAGAAGTTCACGACCGTCCCGGACCGGAGCGAGTGGAAGCTGAGCCCGAACGCGTCTTACGTCTACTACTGCGACAACGAGACAGTCGACGGCGTTGAATTCGATTTCGTTCCGGAAACGAACGGCGTTCCGCTCGTCTGCGACATGTCGTCGAACTTCATGTCACGACCTGTGGATGTGTCGAAGTTCGGCCTCATTTTCGCGGGCGCCCAGAAGAACATCGGTCCAGCCGGAGTTACCGTCGTCATCATTCGCGAAGACTTGCTCGGGCACGCCATGAAAATTACGCCGTCCGTTTTCGATTACGCTGATGTGGCCAAAAATAATTCTGTGAGCAACACGCCACCGACCTTTGTAATCTATTTTTGCTCGCGCGTTTTCGAATGGATCAAGCGAAATGGCGGCATCGAGGGCATGAACAAGCTCGCAACGAAGAAGTCCCAATTGATTTACAGCACAATCAACAGCTCCCACGGCTTCTACACATGCCCCGTCGATGAACGCTATCGCAGTCGCATGAATTTGCCGTTTCGCATTCGGGGCGGAAATGACGCTCTGGAAAAAGAGTTTCTGAAGAAGGCCGAGCAACTCGGCATGATGCAATTGAAGGGCCATCGATCAGTCGGCGGCATCCGTGCGTCGCTGTACAACGCAATAACCGTCGAGAACGTCGAGGCGCTCAATAAGTTTATGAATGAATTTTACGAAAATAACAAGATG
Protein: 361 (aa)
MVINFAAGPAKLPDEVLKEVQQELLNYQGSGMSVMEMSHRGGVYTKIHEDAIKSCRELLNIPDNYKVLFMQGGGTGQFAAVCMNLMGKTGTADYLVTGSWSLKAFKEAQKYGTPNLVFPKPEKFTTVPDRSEWKLSPNASYVYYCDNETVDGVEFDFVPETNGVPLVCDMSSNFMSRPVDVSKFGLIFAGAQKNIGPAGVTVVIIREDLLGHAMKITPSVFDYADVAKNNSVSNTPPTFVIYFCSRVFEWIKRNGGIEGMNKLATKKSQLIYSTINSSHGFYTCPVDERYRSRMNLPFRIRGGNDALEKEFLKKAEQLGMMQLKGHRSVGGIRASLYNAITVENVEALNKFMNEFYENNKM
| Type | Start | End | Length |
| CDS |
6975 |
7019 |
45 |
| CDS |
7105 |
7235 |
131 |
| CDS |
7314 |
7856 |
543 |
| CDS |
7949 |
8312 |
364 |
| intron |
7020 |
7104 |
85 |
| intron |
7236 |
7313 |
78 |
| intron |
7857 |
7948 |
92 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002098612 |
GE23844 [Drosophila yakuba] gb|EDW98324.1| GE23844 [Drosophila yakuba] |
1e-148 |
| InterPro |
IPR015424 |
Pyridoxal phosphate-dependent transferase, major domain |
|
| InterPro |
IPR000192 |
Aminotransferase, class V/Cysteine desulfurase |
|
| InterPro |
IPR020578 |
Aminotransferase class-V pyridoxal-phosphate binding site |
|
| InterPro |
IPR003248 |
Phosphoserine aminotransferase, subgroup |
|
| InterPro |
IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
|
| InterPro |
IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
|
| InterPro |
IPR022278 |
Phosphoserine aminotransferase |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(BP) |
GO:0006564 |
L-serine biosynthetic process |
|
| Gene Ontology(MF) |
GO:0004648 |
O-phospho-L-serine:2-oxoglutarate aminotransferase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0030170 |
pyridoxal phosphate binding |
|
| Pfam |
PF00266.14 |
Aminotransferase class-V |
1.4e-54 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV15415-PA |
| D. melanogaster |
FBgn0014427 |
| D. plexippus |
DPOGS201041PA |
| A. mellifera |
GB19078-PA |
| S. invicta |
SI2.2.0_10082 |
| A. aegypti |
AAEL012578 |
| B. mori |
BGIBMGA012485-TA |
| A. gambiae |
AGAP004598 |
| T. castaneum |
TC000542 |
| C. quinquefasciatus |
CPIJ008287 |
| H. sapiens |
ENSP00000365773 |
| P. humanus |
PHUM522250-PA |
| M. musculus |
ENSMUSG00000024640 |
| P. vanderplanki |
Pv.06000 |
| H. sapiens |
ENSP00000317606 |
| H. melpomene |
HMEL005362-PA |