MidgeBase gene description page [Pn.11736]
Outline
| Gene ID | Pn.11736 |
| Type | Protein coding gene |
| Scaffold | PnScaf14330 |
| Start | 95 |
| End | 2853 |
| Direction | + |
Sequence
Transcript: 2247 (bp)
ATGATGCAGCGTTTGGCTGCCCAGAGTGGCTTTGACAGCTGTCTGGGCGATGAAAAAGGTGAAATGGAAGTTACACCTGCATGCTACGCCCATTTGCTCTCACCGCTTCTGTCATTGGCAAGTGGACGTGTGGCCGTGGTACTTGAAGGTGGATATTGCTTGGAATCACTCGCAGAAGGTGCAGCTATTACTTTGAAAACATTGCTCGGCGATCCGTGTCCTAATTTGGAGCCTCTTGAAGCACCATGCGAAAGCATTCAAGACTCGATTCTTAATTGCATTTACATGCATCGTCATTATTGGAAAAATCTCTGTATTCAATCAGTATACAATATTGAAGAGCTTAATAATGTGAATCCGCAGCCAAACCTTTACCAAGTTCCTCACGAAACCTTCATTGGCGGCGATCCTGTACCCGAGCGATTCCTCACCAGGAACTGCTATCCAGTGCAGAATGAGGTCTTCAAGCTTCGCGTGTCTGAACGTTTGTCGAAACTTCAACTCTTCACTAATCTATCATTCCCTGCAAATCGTGTGTGCTATGTATATGACGAAATTATGCTGCAGCATAAAAACAACTTTGAAGTCGGACATCCAGAACAGCCGGAGAGAATTCGAAAAATCAAAGCACGATTTGTTGAGTTTAACATCATCGGTCGAATGAAACATCTGCCATCGCGTGAGGCTAAAGAAGAAGAGCTCTCACTAGTTCACTCTTCATCGCACATTAAATACATAAAGGAAATTGAAAATCTCGATAATCTAATGGCTGCTGCCGACCAATTTAACTCAGTGTATTTTCACAAAAAAACATACGAGTGTGCACGATATTCCGCCGGTAGTGCATTGCAAGTCGTCGATGAGGTTCTTGGTGGACGATCACAAAGCGGAGTTTGTGTCATTCGACCGCCAGGACATCATTCGGAAAATGATGAACCCCACGGTTTCTGTATCTTTAATAATGTTGCAGTCGCTGCTCAGTACGCTATTAAAGTCCACGGCCTTGAACGAGTGCTGATTGTTGACTGGGATGTCCACTGGGGTAACGGATCGCAACACATTTTTGAGAGTGATCAAAAAGTACTTTACATGTCAATTCATCGCTATGATCATGCGACGTTCTTTCCTCGCAGCAAAGATGCAAACTACACTGAAGTCGGAAACGGCAATGGGAAAGGCTACAATGTAAACATTCCCTGGAACAAGAAGGGAATGGGTGACATGGAATATGTGCTCGCGATGCAAAATATCGTTATGCCGATTGCCTACGAGTATGATCCTCAACTAGTGCTTGTCTCAGCTGGATTTGATGCAGCTGTCGGTGATCCGCTCGGTGGTTGCAAGGTCACTCCCGAGGCCTACGGCCATTTCACGAACTGGTTGTCCGCGCTAGCTAACGGTAAAATTGTGCTTCTTCTTGAAGGCGGCTACAACGTCAACTCAATATCTCACTCGATGACAATGTGTGCGAAATCGCTTCTTGCTGATCCTCTACCATCGCTTCAAATTCCTTCACGGTGGAATGGGATTAACGCGAGTGCATTGGAGAGTATACAAAACGTTATTAGCGTGCATGAAACATATTGGAAGTGCCTAAAATTTAACAAAAAAATGCCCGATTATGATGTTAACGTAAACAAACTTGAGGACGATATTGTCAAGCAAATGGAGTCTATAAAGCTGGACGTGCCGCATGACGCAGGCGATAACAAAAACAGCTCACATCAGTCATCAAACATTTCGGGCGGCAGTTTAGATTCTTGCGAGGCTGGGCCGTCGAGATCAACTGAAAATAGACAAACGTTGAGTGATTTTCTCAATGATAATCTTGAGGCCTTGAATAATGAAGAAATGTATGCCATATTGCCACTAAAATTTTGTCCTCATCTCGAGCTTCTGCATCCAGAAAAGGCGCCAGAATCCATCGATCACAAAAGTGAATGCACCGAGTGTCACACTGTAATTGAGAACTGGATTTGCCTGATTTGTTTCAAAGTTTTTTGCTCACGCTACATAAACGAACATAGTCACTTGCATTTCTTATCATACAACCAACATCCCTTGACGCTAAGTTTTAGTGACTTGTCGGTATGGTGCTATGTTTGCGAGGCATATGTCGATAATCCACAGCTGTACAAGTTTAAAAATCTAGTTCATCAGAGCAAGTTTGGCGAAGACTTGGCGTGGAGTTATGGAGATGCAATGCTCATTAACATGCAAAGAAACGAAGATGACAACGATAGTGAA
Protein: 749 (aa)
MMQRLAAQSGFDSCLGDEKGEMEVTPACYAHLLSPLLSLASGRVAVVLEGGYCLESLAEGAAITLKTLLGDPCPNLEPLEAPCESIQDSILNCIYMHRHYWKNLCIQSVYNIEELNNVNPQPNLYQVPHETFIGGDPVPERFLTRNCYPVQNEVFKLRVSERLSKLQLFTNLSFPANRVCYVYDEIMLQHKNNFEVGHPEQPERIRKIKARFVEFNIIGRMKHLPSREAKEEELSLVHSSSHIKYIKEIENLDNLMAAADQFNSVYFHKKTYECARYSAGSALQVVDEVLGGRSQSGVCVIRPPGHHSENDEPHGFCIFNNVAVAAQYAIKVHGLERVLIVDWDVHWGNGSQHIFESDQKVLYMSIHRYDHATFFPRSKDANYTEVGNGNGKGYNVNIPWNKKGMGDMEYVLAMQNIVMPIAYEYDPQLVLVSAGFDAAVGDPLGGCKVTPEAYGHFTNWLSALANGKIVLLLEGGYNVNSISHSMTMCAKSLLADPLPSLQIPSRWNGINASALESIQNVISVHETYWKCLKFNKKMPDYDVNVNKLEDDIVKQMESIKLDVPHDAGDNKNSSHQSSNISGGSLDSCEAGPSRSTENRQTLSDFLNDNLEALNNEEMYAILPLKFCPHLELLHPEKAPESIDHKSECTECHTVIENWICLICFKVFCSRYINEHSHLHFLSYNQHPLTLSFSDLSVWCYVCEAYVDNPQLYKFKNLVHQSKFGEDLAWSYGDAMLINMQRNEDDNDSE
| Type | Start | End | Length |
| CDS |
95 |
120 |
26 |
| CDS |
196 |
226 |
31 |
| CDS |
345 |
541 |
197 |
| CDS |
620 |
952 |
333 |
| CDS |
1011 |
1452 |
442 |
| CDS |
1517 |
2320 |
804 |
| CDS |
2379 |
2466 |
88 |
| CDS |
2525 |
2850 |
326 |
| intron |
121 |
195 |
75 |
| intron |
227 |
344 |
118 |
| intron |
542 |
619 |
78 |
| intron |
953 |
1010 |
58 |
| intron |
1453 |
1516 |
64 |
| intron |
2321 |
2378 |
58 |
| intron |
2467 |
2524 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657988 |
histone deacetylase [Aedes aegypti] gb|EAT47819.1| histone deacetylase [Aedes aegypti] |
0.0 |
| InterPro |
IPR001607 |
Zinc finger, UBP-type |
|
| InterPro |
IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
|
| InterPro |
IPR023801 |
Histone deacetylase domain |
|
| InterPro |
IPR000286 |
Histone deacetylase superfamily |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF00850.14 |
Histone deacetylase domain |
5.1e-106 |
| Pfam |
PF02148.14 |
Zn-finger in ubiquitin-hydrolases and other protein |
5.5e-16 |
| Pfam |
PF09757.4 |
Arb2 domain |
0.01 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000398801 |
| N. vitripennis |
NV50794-PA |
| H. sapiens |
ENSP00000393916 |
| P. vanderplanki |
Pv.08718 |
| H. sapiens |
ENSP00000392815 |
| A. mellifera |
GB15104-PA |
| H. sapiens |
ENSP00000365804 |
| H. sapiens |
ENSP00000397542 |
| H. sapiens |
ENSP00000334061 |
| H. melpomene |
HMEL009651-PA |
| D. melanogaster |
FBgn0026428 |
| H. sapiens |
ENSP00000394377 |
| M. musculus |
ENSMUSG00000062906 |
| A. aegypti |
AAEL001069 |
| H. sapiens |
ENSP00000403370 |
| H. sapiens |
ENSP00000406150 |
| H. sapiens |
ENSP00000402751 |
| H. sapiens |
ENSP00000365831 |
| T. castaneum |
TC014236 |
| H. sapiens |
ENSP00000402189 |
| D. plexippus |
DPOGS215725PA |
| S. invicta |
SI2.2.0_07643 |
| H. sapiens |
ENSP00000216271 |
| P. humanus |
PHUM538580-PA |
| H. sapiens |
ENSP00000343540 |
| H. sapiens |
ENSP00000365795 |
| C. quinquefasciatus |
CPIJ012311 |
| B. mori |
BGIBMGA005759-TA |
| A. gambiae |
AGAP000532 |
| H. sapiens |
ENSP00000398566 |