MidgeBase gene description page [Pn.11734]
Outline
| Gene ID | Pn.11734 |
| Type | Protein coding gene |
| Scaffold | PnScaf14326 |
| Start | 319 |
| End | 2589 |
| Direction | + |
Sequence
Transcript: 1884 (bp)
ATGACAAGAAAATTTGAAATCGACTATGGAAACAAAATATTTCGGATGGATGGCAAGCCATTTCGTTATGTTGCCGGATCATTTCATTATTTCCGTGCGCATGAAAATACATGGCGTGATAAGCTTCGAAAAATGCGGGCAAGCGGACTGAATGCGGTTGATATTTACATTCAGTGGTCACTCCACAACCCCAAAGATAACGAAAAATATAATTTTGATGGAATTGCTAATGTTACAAAGTTTATTCAAATTGCCACCGAGGAAGATCTTTATATCATTCTCAGACCTGGCCCTTACATCTGTGCAGAAATTGACAATGGGGGCCTCCCGTACTGGCTTGCGACTAAATACCCCGACATTAAAGTCCGTACAAATGATAAAAACTTTTTATATGAAGTTGAAAAGTGGTACAACGTTCTCATGCCGAAATTTGTTGACTTTTTGTACGGAAATGGAGGCAATATTATATTGGTTCAGATCGAGAACGAGTATGGTGCTTTTAAAGCGTGTGATGAAAATTACAAGAATTTTTTGAAGCATTTGACTCTCACATACACTGGTAACCAAGCTGAATTGTTCACAACTGATCGCCCCATCGACAACGAATTGGAGTGTGGAAAGGTCGATGATGTCTTTATCACAACCGATTTTGGAATTGCCACTGAAGAAGAAGTTGCTTATAATTTCATTAATAAACTGAGATCGGTTCAGCCAGATGGACCTCTTGTTAATTCTGAATTCTATACTGGATGGCTCACACATTATCAAGAACCTAATGCGAGACGCGGAGCGAGCGAGTTGGCAGCTACCCTAAGGATTATGATGAATCCGCCTTACAACGCAAGCGTCAATTTCTATATGTTCTTTGGCGGCACCAATTACGGTTTTTGGGCAGGTGCAAACGATTGGGGGATCGGCAAGTACATGGCCGACATTACTAGCTACGACTACGATGCTCCTCTAAGTGAACCTGGCGATCTGACGCCAAAATATCACATATTGAGATCGACACTTCAAAACTACTTACCATTGCCTCCTTTGTTTCTGCCTGATCCATCTAAAAAGATAAAATATCCGTCGATTAATGTCACCGCAGTGAATACAATTTTTTCGCGAGCAGGGCGAGAAATATTAGGATCAAATGCTATTAATTCGGGGGGTAGACTCAAGACGTTTGAAGAACTCGACCAATTTTCTGGCTTTGTTCTCTACGAGACATCGTTACCCACGGTATTTAAGCGAGACCCAGCCAATTTGGTCGTCGAAAAGTTGAGAGATCGCGCTTTGATTTACATCGATGAAAAATTTATCGGAGTTTTATCTAGGGAAAATTCTATCAAGTCACTACCAATTAGCAAAGGATATGCTGGCAGAAAACTGCAAATTCTCGTTGAAAATCAGGGCCGAATTAATTTTCAAGAAAATTTTGATTTTAAAGGGATTCTGGGCAACGTTACATTGCAAATTTTTGAAAAACCTTTTTATGAGGAACTCTCTGATTGGACCATTACCGGATACCCATTTGAAGAGTATTCTAAAATTGAGGCATTTATTTCGAGCGCAGTTGGGTGCAGCGCATGTAATATTGCAAGCAATGGTTGGCTTAAAAGTGGTCCTGCAATTTTTGAAGGCAAATTAACGATTAATCCAGAAGATGAAATTTCCGACACTTGGTGGAGCGTAAAGAATGGCTGGGGAAAGGGAAGTTTGTTTGTGAATGGCGAAAATCTGGGACGCTATTGGTCTATTGGGCCTCAAATGACCATGTACATCGCAAAGGAGTTTTTAAAATATGGATCCAATTCTATTGTTCTTCTCGAGCTTCAGAAGGTACCGCTCGATTTGCAAATAAATTTTGCTGATGAAGCCGACTTCAATGAGAAC
Protein: 628 (aa)
MTRKFEIDYGNKIFRMDGKPFRYVAGSFHYFRAHENTWRDKLRKMRASGLNAVDIYIQWSLHNPKDNEKYNFDGIANVTKFIQIATEEDLYIILRPGPYICAEIDNGGLPYWLATKYPDIKVRTNDKNFLYEVEKWYNVLMPKFVDFLYGNGGNIILVQIENEYGAFKACDENYKNFLKHLTLTYTGNQAELFTTDRPIDNELECGKVDDVFITTDFGIATEEEVAYNFINKLRSVQPDGPLVNSEFYTGWLTHYQEPNARRGASELAATLRIMMNPPYNASVNFYMFFGGTNYGFWAGANDWGIGKYMADITSYDYDAPLSEPGDLTPKYHILRSTLQNYLPLPPLFLPDPSKKIKYPSINVTAVNTIFSRAGREILGSNAINSGGRLKTFEELDQFSGFVLYETSLPTVFKRDPANLVVEKLRDRALIYIDEKFIGVLSRENSIKSLPISKGYAGRKLQILVENQGRINFQENFDFKGILGNVTLQIFEKPFYEELSDWTITGYPFEEYSKIEAFISSAVGCSACNIASNGWLKSGPAIFEGKLTINPEDEISDTWWSVKNGWGKGSLFVNGENLGRYWSIGPQMTMYIAKEFLKYGSNSIVLLELQKVPLDLQINFADEADFNEN
| Type | Start | End | Length |
| CDS |
319 |
321 |
3 |
| CDS |
512 |
672 |
161 |
| CDS |
745 |
1475 |
731 |
| CDS |
1531 |
1655 |
125 |
| CDS |
1723 |
2586 |
864 |
| intron |
322 |
511 |
190 |
| intron |
673 |
744 |
72 |
| intron |
1476 |
1530 |
55 |
| intron |
1656 |
1722 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001845064 |
beta-galactosidase [Culex quinquefasciatus] gb|EDS39080.1| beta-galactosidase [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR001944 |
Glycoside hydrolase, family 35 |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| InterPro |
IPR008979 |
Galactose-binding domain-like |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF01301.14 |
Glycosyl hydrolases family 35 |
1e-108 |
| Pfam |
PF02449.10 |
Beta-galactosidase |
3.9e-19 |
| Pfam |
PF13364.1 |
Beta-galactosidase jelly roll domain |
1.8e-05 |
| Pfam |
PF00150.13 |
Cellulase (glycosyl hydrolase family 5) |
1.8e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.13157 |
| Pn.14510 |
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000045594 |
| A. aegypti |
AAEL004582 |
| A. gambiae |
AGAP002056 |
| H. melpomene |
HMEL012119-PA |
| P. humanus |
PHUM050920-PA |
| N. vitripennis |
NV18427-PA |
| A. mellifera |
GB17852-PA |
| H. sapiens |
ENSP00000382333 |
| S. invicta |
SI2.2.0_00377 |
| H. sapiens |
ENSP00000305920 |
| H. sapiens |
ENSP00000393377 |
| D. melanogaster |
FBgn0001089 |
| H. sapiens |
ENSP00000386354 |
| A. aegypti |
AAEL004575 |
| N. vitripennis |
NV18425-PA |
| H. sapiens |
ENSP00000396615 |
| H. sapiens |
ENSP00000348628 |
| T. castaneum |
TC001367 |
| P. vanderplanki |
Pv.03392 |
| A. aegypti |
AAEL004580 |
| H. sapiens |
ENSP00000374537 |
| H. sapiens |
ENSP00000444628 |
| M. musculus |
ENSMUSG00000031966 |
| P. vanderplanki |
Pv.03393 |
| C. quinquefasciatus |
CPIJ003338 |
| H. sapiens |
ENSP00000344659 |
| C. quinquefasciatus |
CPIJ003337 |
| H. sapiens |
ENSP00000375939 |
| A. gambiae |
AGAP002058 |
| H. sapiens |
ENSP00000295759 |
| A. gambiae |
AGAP002055 |
| P. vanderplanki |
Pv.03391 |
| H. sapiens |
ENSP00000306920 |
| H. sapiens |
ENSP00000374531 |
| P. vanderplanki |
Pv.05899 |
| M. musculus |
ENSMUSG00000026200 |
| D. melanogaster |
FBgn0260746 |
| M. musculus |
ENSMUSG00000079644 |
| B. mori |
BGIBMGA006815-TA |
| T. castaneum |
TC000170 |
| C. quinquefasciatus |
CPIJ003336 |
| T. castaneum |
TC001368 |
| T. castaneum |
TC014348 |
| H. sapiens |
ENSP00000432527 |