MidgeBase gene description page [Pn.11694]
Outline
| Gene ID | Pn.11694 |
| Type | Protein coding gene |
| Scaffold | PnScaf14238 |
| Start | 1002 |
| End | 10069 |
| Direction | + |
Sequence
Transcript: 1326 (bp)
ATGACAGATAATTGCGCGGACGATTGGCGTATAGCAATGACGTGGCAACGTATCAGTCAAATAGGATTAGAGTTAGCCATATGTGCAGTGCATCCTATTCCCGGCGAATATACTTTCCGCTGGGAGACGAAATTATCAAATAAAAACAAAGCTCCTAAGGATGTTGATGTGCCATTCGATGTGGTGCTATCATTGCCAATGTTTCTCCGTTTGTACCTGATTTGTCGTGTTATGCTGCTACATTCGAAGCTTTTTACTGACGCATCGTCGCGCAGTATAGGTGCATTAAATCGAATTAATTTTAACACTAGATTTGTTTTCAAGACGTTAATGACAATATGCCCTGGCACCGTATTATTAGTATTTATGGTTTCGTTATGGATAATTGCATCGTGGACATTGCGGCAGTGCGAAAGATTTCACGACGAAGAACACGCGAATTTGCTAAACTCAATGTGGCTAACAGCAATAACGTTTCTGTGTGTAGGATATGGTGATATTGTTCCGAATACTTATTGCGGGCGAGGAATTACGCTTACCTGCGGAATGGTGAGAGGCGACACTCGCGACGTTATGGCAATGCAGATAATTGAGTTTCACGACGACGAGCACGCCAATTTATTAAACTCAATGTGGCTGATTGCTATAACATTCTTGAGCGTGGGCTTCGGAGACATTGTTCCAAACACTTACTGCGGACGTGGCATTGCCGTCAGTACGGGCATTATGGGTGCTGGCTGTACGGCGTTCTTAGTGGCGCTGCTATCACGAAAACTGGAGCTGACACGAGCCGAGAAGCACGTTCACAACTTCATGATGGACACTCAGCTAACGAAGCGGCTGAAAAATGCTGCGGCAAATGTTTTACGTGAAACATGGCTAATATATAAACACACAAGGTTAGTGAAGCGCGTTAATCCTGGTCGAGTGCGAACACATCAAAGGAAATTTCTACTCGCAATTTACGCACTACGAAAAGTAAAAATGGATCAACGAAAACTCATGGACAACGCCAACACGATAACCGACATGGCGAAGACGCAAAACACCGTCTACGAAATCGTATCGGACATGGCCACACGACAAGATGCCTTAGACGAGAGAATCGCCGCGCTGGAGGAGAAGATTCAGAATATTCGGGAACAACTCGAGTCGCTTCCAGAGGTACTTACGCGATGTTTGTCGCAGCACCAGGACCGCGTCGACCAACGAAGAAACTTCCTCCATCCCGACACGGCCGCGACACTCAACACGACGTCCTCGACCGGCGGTCTGCAAATCGTTCAAGCATCAACAATAGGTTCGCCTTTATTTCCACATTCTAGG
Protein: 442 (aa)
MTDNCADDWRIAMTWQRISQIGLELAICAVHPIPGEYTFRWETKLSNKNKAPKDVDVPFDVVLSLPMFLRLYLICRVMLLHSKLFTDASSRSIGALNRINFNTRFVFKTLMTICPGTVLLVFMVSLWIIASWTLRQCERFHDEEHANLLNSMWLTAITFLCVGYGDIVPNTYCGRGITLTCGMVRGDTRDVMAMQIIEFHDDEHANLLNSMWLIAITFLSVGFGDIVPNTYCGRGIAVSTGIMGAGCTAFLVALLSRKLELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIYALRKVKMDQRKLMDNANTITDMAKTQNTVYEIVSDMATRQDALDERIAALEEKIQNIREQLESLPEVLTRCLSQHQDRVDQRRNFLHPDTAATLNTTSSTGGLQIVQASTIGSPLFPHSR
| Type | Start | End | Length |
| CDS |
1002 |
1312 |
311 |
| CDS |
1409 |
1513 |
105 |
| CDS |
7890 |
8025 |
136 |
| CDS |
8092 |
8132 |
41 |
| CDS |
8267 |
8402 |
136 |
| CDS |
8617 |
8727 |
111 |
| CDS |
9413 |
9540 |
128 |
| CDS |
9627 |
9798 |
172 |
| CDS |
9881 |
10066 |
186 |
| intron |
1313 |
1408 |
96 |
| intron |
1514 |
7889 |
6376 |
| intron |
8026 |
8091 |
66 |
| intron |
8133 |
8266 |
134 |
| intron |
8403 |
8616 |
214 |
| intron |
8728 |
9412 |
685 |
| intron |
9541 |
9626 |
86 |
| intron |
9799 |
9880 |
82 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EHJ68250 |
calcium-activated potassium channel [Danaus plexippus] |
0.0 |
| InterPro |
IPR015449 |
Potassium channel, calcium-activated, SK |
|
| InterPro |
IPR003280 |
Two pore domain potassium channel |
|
| InterPro |
IPR013099 |
Ion transport 2 |
|
| InterPro |
IPR004178 |
Calmodulin-binding domain |
|
| Gene Ontology(BP) |
GO:0006813 |
potassium ion transport |
|
| Gene Ontology(BP) |
GO:0071805 |
potassium ion transmembrane transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0015269 |
calcium-activated potassium channel activity |
|
| Gene Ontology(MF) |
GO:0005267 |
potassium channel activity |
|
| Gene Ontology(MF) |
GO:0005516 |
calmodulin binding |
|
| Gene Ontology(MF) |
GO:0016286 |
small conductance calcium-activated potassium channel activity |
|
| Pfam |
PF04513.7 |
Baculovirus polyhedron envelope protein, PEP, C terminus |
0.054 |
| Pfam |
PF01920.15 |
Prefoldin subunit |
0.02 |
| Pfam |
PF07885.11 |
Ion channel |
1.7e-22 |
| Pfam |
PF07106.8 |
Tat binding protein 1(TBP-1)-interacting protein (TBPIP) |
0.055 |
| Pfam |
PF02888.11 |
Calmodulin binding domain |
1.7e-34 |
| Pfam |
PF10779.4 |
Haemolysin XhlA |
0.011 |
| Pfam |
PF04582.7 |
Reovirus sigma C capsid protein |
0.074 |
| Pfam |
PF04740.7 |
LXG domain of WXG superfamily |
0.025 |
| Pfam |
PF01595.15 |
Domain of unknown function DUF21 |
0.014 |
| Pfam |
PF10018.4 |
Vitamin-D-receptor interacting Mediator subunit 4 |
0.058 |
| Pfam |
PF04156.9 |
IncA protein |
0.2 |
| Pfam |
PF01496.14 |
V-type ATPase 116kDa subunit family |
0.019 |
| Pfam |
PF03530.9 |
Calcium-activated SK potassium channel |
1.5e-14 |
| Pfam |
PF00520.26 |
Ion transport protein |
0.0057 |
| Pfam |
PF07544.8 |
RNA polymerase II transcription mediator complex subunit 9 |
0.002 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.12037 |
| Pn.13719 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000351295 |
| H. sapiens |
ENSP00000421439 |
| H. sapiens |
ENSP00000427120 |
| H. melpomene |
HMEL012958-PA |
| P. vanderplanki |
Pv.09789 |
| A. gambiae |
AGAP010503 |
| P. vanderplanki |
Pv.12464 |
| D. plexippus |
DPOGS214507PA |
| H. sapiens |
ENSP00000264773 |
| N. vitripennis |
NV17696-PA |
| A. mellifera |
GB13636-PA |
| M. musculus |
ENSMUSG00000002908 |
| H. sapiens |
ENSP00000437873 |
| S. invicta |
SI2.2.0_13884 |
| M. musculus |
ENSMUSG00000054477 |
| H. sapiens |
ENSP00000222249 |
| P. vanderplanki |
Pv.12465 |
| P. humanus |
PHUM307630-PA |
| M. musculus |
ENSMUSG00000000794 |
| H. sapiens |
ENSP00000354764 |
| T. castaneum |
TC014196 |
| H. sapiens |
ENSP00000271915 |
| A. aegypti |
AAEL006455 |
| C. quinquefasciatus |
CPIJ008777 |
| B. mori |
BGIBMGA001530-TA |
| D. melanogaster |
FBgn0029761 |
| S. invicta |
SI2.2.0_03825 |