MidgeBase gene description page [Pn.11691]
Outline
| Gene ID | Pn.11691 |
| Type | Protein coding gene |
| Scaffold | PnScaf14178 |
| Start | 1429 |
| End | 2551 |
| Direction | - |
Sequence
Transcript: 864 (bp)
ATGACACCGTTTGCGGGCGGCAGCGACCTCATCAACACGTTCATAAACCTCAAGAAGCGCGTCTTTCTCTTCACCAACAACAGCCAGACGACGCGCGAGGAGATGCTGGTCAAGTGCCGCAAGCTCGGCTACAACATCCAGCTCGAGGACATCGTCACCTCGTGCTATGTCACGGCGCACTACCTCAAGCAGCTGGGCTTCAAGCAGAAGGTGTACGCGATCGGCCCCGAGCAACTCGGCAAGGAGCTCGACGACGTCGGCATCGAGCACATCGGCATCGGCCCCGACAACATCGACTGCCCGGTGGTCGAGTACGTGATGAGGAAGTTCGAGCTCGAGGAGAATGTCGGTGCCGTGATTGCGTCCTTCGACTCGAACTTCTCGTACGCGAAGCTGTGCAAGGCGGTCAACTATTTGAAGGACGAGAACGTGCTCTTTCTCGCCACCAACAACGATCGCTACTTTGACTTTCCCCACCTCAACTTCCTGCTGCCCGAAGTCGGCTGCATAATAAACGCAATCGAGTGCGGATCGTCGCGCATCGCCAAAATAATATCGAAGCCCTCGACCTACGCATGCAACGTCCTGGCGGAGGACGCGCCGCCCATCAACCCGAAGCGAGCGCTCTTCATGGGCGACAACCTCAGAACGGACATGGTGTTTGCGAGCAACGCGGGCTACGAGTCGCTGCTCGTCGGCACCGGCGTCAGTCAGCTGAAGGACGTCCAAGATGTGATCGAGAAGATCGCGAGTGGCGACGAGAGTCCCGAGACGAAGAGACTGCTGCCGGGATTTTACGTGGACAGCCTCGAAGTTTTTTACAAAAAACTCCTCGGAGATGAAAACTCGGCGAGGGCGGGAGAG
Protein: 288 (aa)
MTPFAGGSDLINTFINLKKRVFLFTNNSQTTREEMLVKCRKLGYNIQLEDIVTSCYVTAHYLKQLGFKQKVYAIGPEQLGKELDDVGIEHIGIGPDNIDCPVVEYVMRKFELEENVGAVIASFDSNFSYAKLCKAVNYLKDENVLFLATNNDRYFDFPHLNFLLPEVGCIINAIECGSSRIAKIISKPSTYACNVLAEDAPPINPKRALFMGDNLRTDMVFASNAGYESLLVGTGVSQLKDVQDVIEKIASGDESPETKRLLPGFYVDSLEVFYKKLLGDENSARAGE
| Type | Start | End | Length |
| CDS |
1432 |
1793 |
362 |
| CDS |
2050 |
2551 |
502 |
| intron |
1794 |
2049 |
256 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002024093 |
GL22743 [Drosophila persimilis] ref|XP_001353955.2| GA18976 [Drosophila pseudoobscura pseudoobscura] gb|EDW29491.1| GL22743 [Drosophila persimilis] gb|EAL29691.2| GA18976 [Drosophila pseudoobscura pseudoobscura] |
2e-51 |
| InterPro |
IPR023215 |
Nitrophenylphosphatase-like domain |
|
| InterPro |
IPR006357 |
HAD-superfamily hydrolase, subfamily IIA |
|
| InterPro |
IPR023214 |
HAD-like domain |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Pfam |
PF13344.1 |
Haloacid dehalogenase-like hydrolase |
1.8e-18 |
| Pfam |
PF13242.1 |
HAD-hyrolase-like |
1.1e-08 |
| Pfam |
PF13419.1 |
Haloacid dehalogenase-like hydrolase |
0.00055 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.01362 |