MidgeBase gene description page [Pn.11645]
Outline
| Gene ID | Pn.11645 |
| Type | Protein coding gene |
| Scaffold | PnScaf14039 |
| Start | 741 |
| End | 1112 |
| Direction | + |
Sequence
Transcript: 222 (bp)
ATGTTCAAGTTTGTCGTTTTATTGGCCTTCGTTGCCTCGGCCCTCGGTGCCAGCCTCACAAAGGAGTCGCCCCTCATCGATCCAGAGTGGGAAGGCTTCATTGTCGGCGGCTCGACTGCCGCTGCTGGACAGTTCCCTCACCAGGTTTCGCTCAGAAGTGCTGGCAACGCTCACTTCTGCGGTGGCTTCGTCATCAACAACCGCTGGGTCGGATCAGCCGAA
Protein: 74 (aa)
MFKFVVLLAFVASALGASLTKESPLIDPEWEGFIVGGSTAAAGQFPHQVSLRSAGNAHFCGGFVINNRWVGSAE
| Type | Start | End | Length |
| CDS |
741 |
960 |
220 |
| CDS |
1108 |
1109 |
2 |
| intron |
961 |
1107 |
147 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACF19792 |
serine-type enodpeptidase SP [Chironomus riparius] |
1e-27 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00089.21 |
Trypsin |
3.2e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes