MidgeBase gene description page [Pn.11637]
Outline
| Gene ID | Pn.11637 |
| Type | Protein coding gene |
| Scaffold | PnScaf13985 |
| Start | 42373 |
| End | 54323 |
| Direction | + |
Sequence
Transcript: 912 (bp)
ATGACGAAGGATAGATTAGCAGCACTTCACGCGGCTCAGAGCGATGACGAAGACGCGGGAATGGATGATGTTGCCATCAATGTCGATGGCTTCATGGAGGAGTTCTTCAGTGAGGTGGAAGAGGTCCGGGAGATGATAGATAAAATACAGTTCAATGTGGAGGAGGTCAAGAAAAAACACAGCAACATCCTATCTGCTCCTCAGACGGACGAGAAAACCAAGCAAGAACTAGAGGATCTGATGGCAGATATTAAGAAAAATGCCAATAGAGTTAGAGGAAAACTAAAGACTATCGAACAAAGTATCGAGCAGGAAGAGCAAAGTAAAGCGGCAAGCGCCGACTTACGAATACGTAAGACCCAGCATTCGACACTTTCACGAAAATTTGTCGAGGTGATGACAGAATATAATCGAACACAAACTGATTACCGAGAAAGGTGTAAAGCAAGAATACAACGTCAATTGGAAATCACTGGTAAGGCGACAACAAATGAGGAACTTGAAGAGATGTTGGAGCAAGGAAACTCTGCAGTGTTTACACAAGGAATTATTATGGAAACACAACAAGCAAAGCAGACCCTGGCAGATATCGAGGCACGCCACGCAGATATCATCAAACTTGAAAACTCAATCCGAGAACTGCATGACATGTTTATGGACATGGCCATGTTAGTCGAGAGTCAGGGTGAAATGATTGATCGCATAGAGTATCATGTTGAGCATGCGATGGATTATGTCCAAACCGCGACACAAGATACAAAAAAAGCACTCAAATACCAAAGTAAAGCTCGTCGGGGAGAATTGGTGGATCGCATTGAGAATCATGTTGAGAGCGGCAAGAATTATACTGAAATTGCAAAAAAGGACATTTATCAAGCATCCGTGTATGCGGAGAAAGCGAGGAAGGTCAGA
Protein: 304 (aa)
MTKDRLAALHAAQSDDEDAGMDDVAINVDGFMEEFFSEVEEVREMIDKIQFNVEEVKKKHSNILSAPQTDEKTKQELEDLMADIKKNANRVRGKLKTIEQSIEQEEQSKAASADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRERCKARIQRQLEITGKATTNEELEEMLEQGNSAVFTQGIIMETQQAKQTLADIEARHADIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQSKARRGELVDRIENHVESGKNYTEIAKKDIYQASVYAEKARKVR
| Type | Start | End | Length |
| CDS |
42373 |
42405 |
33 |
| CDS |
51926 |
52106 |
181 |
| CDS |
52182 |
52255 |
74 |
| CDS |
52322 |
52505 |
184 |
| CDS |
52577 |
52650 |
74 |
| CDS |
52752 |
52889 |
138 |
| CDS |
53144 |
53254 |
111 |
| CDS |
54204 |
54320 |
117 |
| intron |
42406 |
51925 |
9520 |
| intron |
52107 |
52181 |
75 |
| intron |
52256 |
52321 |
66 |
| intron |
52506 |
52576 |
71 |
| intron |
52651 |
52751 |
101 |
| intron |
52890 |
53143 |
254 |
| intron |
53255 |
54203 |
949 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFA10686 |
Syntaxin 1A [Tribolium castaneum] |
1e-135 |
| InterPro |
IPR000727 |
Target SNARE coiled-coil domain |
|
| InterPro |
IPR006012 |
Syntaxin/epimorphin, conserved site |
|
| InterPro |
IPR010989 |
t-SNARE |
|
| InterPro |
IPR006011 |
Syntaxin, N-terminal |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0016192 |
vesicle-mediated transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005484 |
SNAP receptor activity |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00015.16 |
Methyl-accepting chemotaxis protein (MCP) signalling domain |
0.015 |
| Pfam |
PF04632.7 |
Fusaric acid resistance protein family |
4.1 |
| Pfam |
PF02346.11 |
Chordopoxvirus fusion protein |
0.00042 |
| Pfam |
PF07464.6 |
Apolipophorin-III precursor (apoLp-III) |
1.2 |
| Pfam |
PF09969.4 |
Uncharacterized conserved protein (DUF2203) |
5.7 |
| Pfam |
PF01499.11 |
Herpesvirus UL25 family |
5.4 |
| Pfam |
PF06013.7 |
Proteins of 100 residues with WXG |
2.2 |
| Pfam |
PF05137.8 |
Fimbrial assembly protein (PilN) |
0.042 |
| Pfam |
PF06889.6 |
Protein of unknown function (DUF1266) |
3.3 |
| Pfam |
PF14389.1 |
Leucine-zipper of ternary complex factor MIP1 |
0.026 |
| Pfam |
PF01496.14 |
V-type ATPase 116kDa subunit family |
0.76 |
| Pfam |
PF08920.5 |
Splicing factor 3B subunit 1 |
0.11 |
| Pfam |
PF06148.6 |
COG (conserved oligomeric Golgi) complex component, COG2 |
1.2 |
| Pfam |
PF05531.7 |
Nucleopolyhedrovirus P10 protein |
5.8 |
| Pfam |
PF05957.8 |
Bacterial protein of unknown function (DUF883) |
7.8 |
| Pfam |
PF02097.10 |
Filoviridae VP35 |
1.1 |
| Pfam |
PF13166.1 |
AAA domain |
0.51 |
| Pfam |
PF05739.14 |
SNARE domain |
2.6e-29 |
| Pfam |
PF00804.20 |
Syntaxin |
3.6e-38 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM095410-PA |
| T. castaneum |
TC011694 |
| A. gambiae |
AGAP007698 |
| H. sapiens |
ENSP00000215095 |
| H. melpomene |
HMEL007730-PA |
| A. mellifera |
GB19580-PA |
| C. quinquefasciatus |
CPIJ000184 |
| N. vitripennis |
NV14355-PA |
| S. invicta |
SI2.2.0_10008 |
| A. aegypti |
AAEL009304 |
| H. sapiens |
ENSP00000222812 |
| P. vanderplanki |
Pv.05013 |
| D. plexippus |
DPOGS212120PA |
| D. melanogaster |
FBgn0013343 |
| B. mori |
BGIBMGA006590-TA |
| H. sapiens |
ENSP00000455899 |
| M. musculus |
ENSMUSG00000030806 |
| M. musculus |
ENSMUSG00000007207 |
| H. sapiens |
ENSP00000459531 |