MidgeBase gene description page [Pn.11633]
Outline
| Gene ID | Pn.11633 |
| Type | Protein coding gene |
| Scaffold | PnScaf13985 |
| Start | 23731 |
| End | 25329 |
| Direction | + |
Sequence
Transcript: 1536 (bp)
ATGTCAATTGCTGCTATGAAATTATGCAGTATGGTGCTGCAAGAGCACTTTGGCGATGTGGTACGAGCTGTGGGTGATGATCTTTTTTGTGCAAAGACAAGAACCGTCTACGAAATTGTAAAGAGAACAAATCTCACAAGGAGACAGGTCGTTTCGAGTCTTGCGATTCTCATACAGTACCGCTTAGTGAGTTTCATCGCCTCTGAGGCTAATGACAACGTTGCAGAATATACGCTTTTGCATGACAAAGTTTTGCTGTTCATTCGCTATCCTCGCTACATGTATTTCATGCAGAAGAAGCATGGAAATCCAGCTGCACTTTTGCTAGAGGAGCTACTTAAATCTGGTATGTCGCCAGCTCGATCGGCTATAGTTCAAGCGTACAATCATTCGGATGACAAAAATGACAAGACACTAACCGAGTTGAGAGATACTTTCATTGATCTTATTAGCATGAAATATTTCATACGCTGCCCGCAAATGAGCGATGATCCAGTACCAAAGGAGATAAACAGTCTAGAAGGAAGTTTTCAAGCGCCGAATATTGATATGAAAGAGCTAAAAGCGATAATCGAGAGCGGCAACAGTAATGATGGTGAAATTAAAGAGAAACAAGTTTATTGGACCGTTAATTTCGACAAGTTTCATCAATGTTTCCGTGACAAAGTTCTTTGTGACATCATTGAGCGTCAAATTGACGCAAACGCTGCCGAATGCTTTAAATTCATCTTAGCGTTGATGTTTAAAAATACTGAAACTTGGGCCTCGACCTCAAATCCCATATCGTTAGGAGAAATTAAGCAAATGGCTGAGAAAAAATCGACTAACGCAGAACTTGTTCGATATATGGATCAATATATCTCGATAATCCAAAGAGACGAATGCGGCTTTCTTAAAAAAGATAATGACTTTGGCGGTGGAATATACAATGTTGACATGAAGACGGCTCTATCACAAATTGCCTGGTCACTAATTGATAGTTCAGTTAGCCAGAAATTTGGAGCGAAAGCAGCGAGAATATTCAGAGTCGTCAGGGCGAAAAAGTACATTGAACAAGATGAGATTCAACGAGAAGCAATGATTCCGCCAAAAGAAGCACGACTGTTCACCTATAAGCTTTTGGAAGAAAATCTCTTGCTTATTAAGTCGGTTAAAAAAAGTGGCGGTCTGGGACCTTCAAAGCCAATTTATCTCTTTTACGTAAGTCAATATCAAATTGTCAGGGATCTCACCGAAACGTGCTACAAGACTCTCTACAACTCTATGGTGCGAGTTAATCAGGATAAGGAGGCAAGTAAAAGACTCATGGACAAGGAAATGCGTCTCCAACTGGTCATCGAAAGTCTCAGAGAACGTGGGGACTCCGAGGAGGCCATACAAGAAATTAGCGAAACGTTAACACCACCCGAGCGAGAGTCAATTAAAAATTCCAAAATGCGATTAAAACGCCTCGAGAGCTCCGAAATTTTAGTCGATGAGATGCTTTTCCTGTTGCAACTTTATTTGTACTATCATTCTCCGTCGAATGCAAACAGG
Protein: 512 (aa)
MSIAAMKLCSMVLQEHFGDVVRAVGDDLFCAKTRTVYEIVKRTNLTRRQVVSSLAILIQYRLVSFIASEANDNVAEYTLLHDKVLLFIRYPRYMYFMQKKHGNPAALLLEELLKSGMSPARSAIVQAYNHSDDKNDKTLTELRDTFIDLISMKYFIRCPQMSDDPVPKEINSLEGSFQAPNIDMKELKAIIESGNSNDGEIKEKQVYWTVNFDKFHQCFRDKVLCDIIERQIDANAAECFKFILALMFKNTETWASTSNPISLGEIKQMAEKKSTNAELVRYMDQYISIIQRDECGFLKKDNDFGGGIYNVDMKTALSQIAWSLIDSSVSQKFGAKAARIFRVVRAKKYIEQDEIQREAMIPPKEARLFTYKLLEENLLLIKSVKKSGGLGPSKPIYLFYVSQYQIVRDLTETCYKTLYNSMVRVNQDKEASKRLMDKEMRLQLVIESLRERGDSEEAIQEISETLTPPERESIKNSKMRLKRLESSEILVDEMLFLLQLYLYYHSPSNANR
| Type | Start | End | Length |
| CDS |
23731 |
23877 |
147 |
| CDS |
23938 |
25326 |
1389 |
| intron |
23878 |
23937 |
60 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001851545 |
DNA-directed RNA polymerase III subunit C [Culex quinquefasciatus] gb|EDS33684.1| DNA-directed RNA polymerase III subunit C [Culex quinquefasciatus] |
1e-128 |
| InterPro |
IPR013197 |
RNA polymerase III subunit RPC82-related, helix-turn-helix |
|
| InterPro |
IPR008806 |
RNA polymerase III Rpc82, C -terminal |
|
| Gene Ontology(BP) |
GO:0006351 |
transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF05645.8 |
RNA polymerase III subunit RPC82 |
1.7e-20 |
| Pfam |
PF08221.6 |
RNA polymerase III subunit RPC82 helix-turn-helix domain |
6.3e-18 |
| Pfam |
PF02002.12 |
TFIIE alpha subunit |
5.1e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS205979PA |
| P. humanus |
PHUM105740-PA |
| H. sapiens |
ENSP00000464345 |
| M. musculus |
ENSMUSG00000028099 |
| A. aegypti |
AAEL007496 |
| P. vanderplanki |
Pv.14944 |
| H. sapiens |
ENSP00000358300 |
| T. castaneum |
TC008189 |
| A. mellifera |
GB18629-PA |
| H. sapiens |
ENSP00000463725 |
| C. quinquefasciatus |
CPIJ009822 |
| N. vitripennis |
NV17082-PA |
| H. sapiens |
ENSP00000334564 |
| A. gambiae |
AGAP002394 |
| B. mori |
BGIBMGA009408-TA |
| D. melanogaster |
FBgn0038057 |
| H. melpomene |
HMEL014869-PA |
| P. vanderplanki |
Pv.05017 |