MidgeBase gene description page [Pn.11627]
Outline
| Gene ID | Pn.11627 |
| Type | Protein coding gene |
| Scaffold | PnScaf13985 |
| Start | 3378 |
| End | 14968 |
| Direction | + |
Sequence
Transcript: 1815 (bp)
ATGGATATTGAGCTATTGAGAGAACAGTTTGATGAATTAGGTGTTGAAGCATCACAAGAGGTCTTGGAAAAGTGCTTGGAAATTTGTTCCTCACATGGCCTAGATGACCCGGTCGAATTTGTCGAGAAATGGATGGCTTATAGCATATCGAATCTCAACGGTGCTGAGCCAACAGTTGGTTATCTCACTGAAATGGCAAACAAAGAATACAAGCATCAAAACAGGAAAGTGCAAAAAAACATCGCAAACAAACGATCGATCATCAACAGCGAATCGTCAAATCTGATAGTTTACAACCAAGGAAACGATGATATGGACGAGGAGGAGAACGAGTTGCTAGGATCGTACGTCTGCATAACGCCAAAAAATGATAAAAAGGCAGCTTCGAGACTTCAACTCGGCACTCCTGATGCTGCAAGAGCAAATACATTTAGTCCTCTGAGCTACTCACCGCTAACCACAGCGAAGAGATCACGCATTGAAACGGCAAAATCGGGTAGTGTTTGTACGTTTGGAAAATATACGGCAAGCTTGTCTAAAAACCATCAAAAGATTTTTGTTAGTTTAGCAAACCTCGACGGAGCCCAGTTTCTTGGTGATAAAGTAAAGTATATGACAACTTCTGTGGATGATGGACAATATGTGACAGATAGAATCTACAAAGTCGGCCGTGAGTTTTCAAAAAAGATTTTGCAAGACGAAAAGAAGAGGAATAACACGAATGAAGAAAGTTCGGACGATATCGTTGCACTTAGTCACTGCGATGAACTGTCGCAAGACAGTGTTCGGTGCTTGGGGAAAATTTTCTGTGGTGGGCGTTCGGATAAATTAGATCAAAAGTCTTGTGTCTTCATAGGCTTCGATGAGAATAAACTGAGAACGGTTCAGCTAGATTTGACGCGCCTAAGACCTTCCGCTCCAATTTTTCCCGGCGAGATTTGTATTATCGGTGGAAATAATCCACGTGGTAAAAACTTTTCCGTAACTGAATTATACGTGGAGAGAGTTTTAGAAAATTGTAAACTGCCATCGGAGCAAAAACTCACAGATGCCGTAAATTTCGCGATTGCTTCTGGACCATTCACTTCGGATGAAAATTTACTGTTTGAATATCTCGATAAGCTCGTGGAAAATTGTCAAAATAACAAGCCCGATGTTTTGATACTTTTGGGCGAATTTTTCAATGCGAAATCGCAGCTCATCCTTGATCTTGCGACAGAAACGAATGAACACTTCAGAAAAATGCTCACCAGCATTGGTGAACGATTGGGCGAGGACACAAAAGTCGTGATTGTCTCATCAGTAAATGATATCAATGGCTCAGCATGCTATCCCACACGACCGTATGCGTTTCGACGAAGTCTGGGAACATCAAACATTTTTCTCGCGCCCGATCCATGCATTCTGAGCGTTAACGGTATAAAAATCGCTGCAACTTCGGTCGACATCACTAAGCATTTGGCTGACTCAGAATTTCGCATGAATGCGGGCGGCGGTGGTGGTGGTGATAAGATTCGACGCTACATCAACTATTTATTCCATCAAAAGTCCTTCTATCCTCTATTCCCTCCCAAAGTACCAACTGATATAAAACTGTTGTACGAATATGCAACGATCAATGAAATTCCACACATGCTCATAGCACCGAGTGATTTGAAATTTTATATGAGGGACTTTAACAATTGCCTCTGCATTAATCCTGGTCGTGTTAAGAGCGATACCGGCAATGGGACGTTCGCACGGGTAACGGTGCAACCGCCGCCGAGGGAAGTCAAAGGTCTAAACTCGTGGATGTCTGGACAAATCACCTATTTA
Protein: 605 (aa)
MDIELLREQFDELGVEASQEVLEKCLEICSSHGLDDPVEFVEKWMAYSISNLNGAEPTVGYLTEMANKEYKHQNRKVQKNIANKRSIINSESSNLIVYNQGNDDMDEEENELLGSYVCITPKNDKKAASRLQLGTPDAARANTFSPLSYSPLTTAKRSRIETAKSGSVCTFGKYTASLSKNHQKIFVSLANLDGAQFLGDKVKYMTTSVDDGQYVTDRIYKVGREFSKKILQDEKKRNNTNEESSDDIVALSHCDELSQDSVRCLGKIFCGGRSDKLDQKSCVFIGFDENKLRTVQLDLTRLRPSAPIFPGEICIIGGNNPRGKNFSVTELYVERVLENCKLPSEQKLTDAVNFAIASGPFTSDENLLFEYLDKLVENCQNNKPDVLILLGEFFNAKSQLILDLATETNEHFRKMLTSIGERLGEDTKVVIVSSVNDINGSACYPTRPYAFRRSLGTSNIFLAPDPCILSVNGIKIAATSVDITKHLADSEFRMNAGGGGGGDKIRRYINYLFHQKSFYPLFPPKVPTDIKLLYEYATINEIPHMLIAPSDLKFYMRDFNNCLCINPGRVKSDTGNGTFARVTVQPPPREVKGLNSWMSGQITYL
| Type | Start | End | Length |
| CDS |
3378 |
3450 |
73 |
| CDS |
3513 |
3805 |
293 |
| CDS |
12922 |
13010 |
89 |
| CDS |
13392 |
14417 |
1026 |
| CDS |
14569 |
14758 |
190 |
| CDS |
14822 |
14965 |
144 |
| intron |
3451 |
3512 |
62 |
| intron |
3806 |
12921 |
9116 |
| intron |
13011 |
13391 |
381 |
| intron |
14418 |
14568 |
151 |
| intron |
14759 |
14821 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843253 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS31312.1| conserved hypothetical protein [Culex quinquefasciatus] |
1e-103 |
| InterPro |
IPR013627 |
DNA polymerase alpha, subunit B N-terminal |
|
| InterPro |
IPR016722 |
DNA polymerase alpha, subunit B |
|
| InterPro |
IPR007185 |
DNA polymerase alpha/epsilon, subunit B |
|
| Gene Ontology(BP) |
GO:0006260 |
DNA replication |
|
| Gene Ontology(MF) |
GO:0003887 |
DNA-directed DNA polymerase activity |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF04042.11 |
DNA polymerase alpha/epsilon subunit B |
2.2e-28 |
| Pfam |
PF08418.5 |
DNA polymerase alpha subunit B N-terminal |
2.6e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000265465 |
| P. humanus |
PHUM003740-PA |
| C. quinquefasciatus |
CPIJ001712 |
| A. gambiae |
AGAP004392 |
| N. vitripennis |
NV15441-PA |
| M. musculus |
ENSMUSG00000024833 |
| B. mori |
BGIBMGA005158-TA |
| S. invicta |
SI2.2.0_03428 |
| A. mellifera |
GB12486-PA |
| A. aegypti |
AAEL009905 |
| A. aegypti |
AAEL007692 |
| P. vanderplanki |
Pv.05023 |
| H. sapiens |
ENSP00000443222 |
| C. quinquefasciatus |
CPIJ001713 |
| T. castaneum |
TC005585 |
| D. melanogaster |
FBgn0005696 |
| D. plexippus |
DPOGS204200PA |