MidgeBase gene description page [Pn.11625]
Outline
| Gene ID | Pn.11625 |
| Type | Protein coding gene |
| Scaffold | PnScaf13985 |
| Start | 388 |
| End | 1123 |
| Direction | + |
Sequence
Transcript: 615 (bp)
ATGATTTTAGACGGTTATTCAACAGCAGAAGCTTCATTCACAATTGAGATTGAAATGCCAAAAAATGCAGAGGCAACCAACCTATATGGTGTGAAAAATCATTTGAAAAAGCTTTTCGAGTCTAAAGACTTCACTGATGTCACAATCAAAGTTGTTGACAAAGAAATTAAAGTACACAAGAACGTTTTAAGCCGTTCAGACGTTTTCAATAAAATGCTTAAAAAGAATACGGAAGAATCGCGAACTGGAATTATTAATATTAAAGACATCGAGTATGAAGTAATTGTTGAAATGTGTCGTTATTTGTATTATGATCAGTTAACGAAAATTGACACTCTCGCTCTTGGGCTTCTCGTTGCTGCCGACAAATACTTAATTGATGATCTAGCTGCGAAATGTGAGTCATACCTCATCTCAAACATAAATAATACAAACTTCATCGACATTATTTTGACTGCTGACATGCTCAAAAAAGAGAAGCTACAAGATGCTGCAATTGATTACATAATTAACAACCGAAAGACCGTATTTCCTTCGGACGCCTGGAAAAAATTAAAGACGGAAAATATGCCCCTTGCTATGCTCGTGATGGAAAAATTCATGCTCAGTCAAAAT
Protein: 205 (aa)
MILDGYSTAEASFTIEIEMPKNAEATNLYGVKNHLKKLFESKDFTDVTIKVVDKEIKVHKNVLSRSDVFNKMLKKNTEESRTGIINIKDIEYEVIVEMCRYLYYDQLTKIDTLALGLLVAADKYLIDDLAAKCESYLISNINNTNFIDIILTADMLKKEKLQDAAIDYIINNRKTVFPSDAWKKLKTENMPLAMLVMEKFMLSQN
| Type | Start | End | Length |
| CDS |
388 |
435 |
48 |
| CDS |
495 |
958 |
464 |
| CDS |
1018 |
1120 |
103 |
| intron |
436 |
494 |
59 |
| intron |
959 |
1017 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002749517 |
PREDICTED: speckle-type POZ protein-like isoform 2 [Callithrix jacchus] |
1e-22 |
| InterPro |
IPR013069 |
BTB/POZ |
|
| InterPro |
IPR011333 |
BTB/POZ fold |
|
| InterPro |
IPR000210 |
BTB/POZ-like |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF11822.3 |
Domain of unknown function (DUF3342) |
0.011 |
| Pfam |
PF08476.5 |
Viral D10 N-terminal |
0.98 |
| Pfam |
PF07707.10 |
BTB And C-terminal Kelch |
7.5e-05 |
| Pfam |
PF00651.26 |
BTB/POZ domain |
2.9e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.05028 |
| P. vanderplanki |
Pv.13432 |
| P. vanderplanki |
Pv.17085 |