MidgeBase gene description page [Pn.11621]
Outline
| Gene ID | Pn.11621 |
| Type | Protein coding gene |
| Scaffold | PnScaf13955 |
| Start | 29919 |
| End | 32282 |
| Direction | - |
Sequence
Transcript: 2124 (bp)
ATGAGTGAACAAATTGCAAATCAGGATCAGCAGTGTACAGACATTGACTCGTATAGAAAATTGGTGAAGAATTTAATAGACTTAAGAAGATACAAATCGGCCTTGTATTGGTCAGAGAAAGTGGCTGTTCTGTCAAACAACTCCCCAAAAGATGTCTATCAACTTGCACAATGTATGTACATGCTCAAGGAATACAGCAGAGCCAGTCACACAATAAAGAGAAACAAGTTGGAAAAGAAGAATCTTCTGTGTCTAACTCTGCTCGTCGAATGCCTTTTTGCGTCGAAAGAATATCAAGAAGCTCTCAATCTACTTGATTCTCTCGAAATTGAGGACCTCAATTCCTCTCTGCAAGATGAAACGCACACTGACACTGTGTCTAGCCAAATAAATGATGTGTCCAAAAATGATATTCTTGCATCGCTGTATCTTCTCAAAGCTAAAATTCTGGAAGCCTTAGAGAAGAGATCTTTGGCAATAGACTGTTACATTCAAGTCCTTCAAAAATCGGTTTATCTCACTGAAGCACTAGACGCTTTGTTTCAACACGAAATACTAATGGCTTGGGAGGAGAAAGACCTTTTACAGAACATAATGCCTGACAAGCAACAATGTAATGCTGCGGATTTACAAATACTAAAATATTTGTATGACCAAAAACTCAAGAAATATTATTCTTCGTCCTCGTTGTCACAACAGGGAAGTCATCCTGAAAAAACGCCGAGCAATGCTCAAATCATCAATGCCATAAACGAGAAGATAAAGACAAATGAATCGACGTCGATTGAGGGACGCAAATCAATTTCAACCTCAACTGCTGTTAAGGGAAGTACCAAACTCTTCTCGACGCCTATTGCATCGATCATGTCGCCAGCAAACAAAATTCTCTACGACCTCAAAAACACTTCTGCATCATCGTTTTCAATACAAGCCAGTCTATCGAGATCTGTACTGAATAGTAGTCGCACTGTCAACACGAACAAAGTTACGTGCAAGAGCGTGAACAACGTCGGCGGAGAGGCATTAACTACCAGCAATGCCCTTAAACTGCTCAGTCATAGCGTGGACGCTATGGTTGCAAAAGCAGAAGAAAAATTTTATAATTGTGAATACAAGAAATGCCTGAAAATAATCGACGAAATTCTGGAACGAGATCCGTATCATAAACGAACGCTGTTTGTGCAAATCGGTTGCCTCATGGAGCTCAAAGATTCAAACGCTCTCTTCTACATGGCGCACAAATTGGTCGACTTCAATCCGGACGATGCGATAAGTTGGTATGCTGTTGGATCTTACTACATTCTGATCAACAAGCCTGAGCAAGGAAGGCGCTATCTGACAAAGGCAGCTGTGCTTGACCGTCTCTTTGGTCCGGCATGGCTTTCGTACGGTCATTCATTTGCGAAAGAGAAAGAGCACGATCAAGCGATGGCAGCGTATTTTAAGGCTATTCAGCTAATGCGTGGATCTCATTTGCCGCTGCTTTACATTGGTGTTGAGTGTGGGCTGACGAAAAACTACGAAATGGCCGAGAAATTCTTCTATCAGGCCTTAGCACTGGCGCCCTTTGACGTTTTCGTTCTGCATGAATTGGGTGTCATTAAATACGAGTCTGAATTGTACGGCGAAGCAGAAGATATTTTCCGAACAACTCTCAGCATGGTGACTGAAATGTGTGCACGAAACAACGAGTCGCTAACCGATCGATGGGAGCCTCTCCTTAACAACCTCGGACACTGCTGTAGGAAGAACAACATGCTGGCTGAATCGTTGAGTTTTCACACACGGGCTCTCTCGTTGAAACCGCTGAATTCACAAACGTACACCTCAATTGGATTTGTTCTGGCGCTAATGGGTCGCTTGAGCGAAGCTGTCGAAGCCTTTCATAAAAGTTTGGCGCTGAAACGAGATGACGTGATTACGAGCACAATTCTGAAAACTGTTCTGGAGGATATGGTTGAGGAAATGGTCGAGGTAGTAGATGATGCAAAAGAAAACCAAACTCAAATTGACATCATGGCAGTTGATCCGATAAAAACTGAAGAATCTAAGGAGAACGAAGCCAATCGAAAACTTAGGTTCGAGGAACACGAAACGTCAGCGGAAATGAGCTTAGACTGTGAC
Protein: 708 (aa)
MSEQIANQDQQCTDIDSYRKLVKNLIDLRRYKSALYWSEKVAVLSNNSPKDVYQLAQCMYMLKEYSRASHTIKRNKLEKKNLLCLTLLVECLFASKEYQEALNLLDSLEIEDLNSSLQDETHTDTVSSQINDVSKNDILASLYLLKAKILEALEKRSLAIDCYIQVLQKSVYLTEALDALFQHEILMAWEEKDLLQNIMPDKQQCNAADLQILKYLYDQKLKKYYSSSSLSQQGSHPEKTPSNAQIINAINEKIKTNESTSIEGRKSISTSTAVKGSTKLFSTPIASIMSPANKILYDLKNTSASSFSIQASLSRSVLNSSRTVNTNKVTCKSVNNVGGEALTTSNALKLLSHSVDAMVAKAEEKFYNCEYKKCLKIIDEILERDPYHKRTLFVQIGCLMELKDSNALFYMAHKLVDFNPDDAISWYAVGSYYILINKPEQGRRYLTKAAVLDRLFGPAWLSYGHSFAKEKEHDQAMAAYFKAIQLMRGSHLPLLYIGVECGLTKNYEMAEKFFYQALALAPFDVFVLHELGVIKYESELYGEAEDIFRTTLSMVTEMCARNNESLTDRWEPLLNNLGHCCRKNNMLAESLSFHTRALSLKPLNSQTYTSIGFVLALMGRLSEAVEAFHKSLALKRDDVITSTILKTVLEDMVEEMVEVVDDAKENQTQIDIMAVDPIKTEESKENEANRKLRFEEHETSAEMSLDCD
| Type | Start | End | Length |
| CDS |
29922 |
30826 |
905 |
| CDS |
30889 |
30968 |
80 |
| CDS |
31031 |
31473 |
443 |
| CDS |
31529 |
31816 |
288 |
| CDS |
31875 |
32282 |
408 |
| intron |
30827 |
30888 |
62 |
| intron |
30969 |
31030 |
62 |
| intron |
31474 |
31528 |
55 |
| intron |
31817 |
31874 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_315195 |
AGAP004623-PA [Anopheles gambiae str. PEST] gb|EAA10572.6| AGAP004623-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR001440 |
Tetratricopeptide TPR-1 |
|
| InterPro |
IPR011990 |
Tetratricopeptide-like helical |
|
| InterPro |
IPR013026 |
Tetratricopeptide repeat-containing domain |
|
| InterPro |
IPR019734 |
Tetratricopeptide repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF07719.12 |
Tetratricopeptide repeat |
2.9e-18 |
| Pfam |
PF13174.1 |
Tetratricopeptide repeat |
1.5 |
| Pfam |
PF13176.1 |
Tetratricopeptide repeat |
3.4e-07 |
| Pfam |
PF03704.12 |
Bacterial transcriptional activator domain |
0.11 |
| Pfam |
PF04049.8 |
Anaphase promoting complex subunit 8 / Cdc23 |
0.011 |
| Pfam |
PF13374.1 |
Tetratricopeptide repeat |
4.9e-06 |
| Pfam |
PF13181.1 |
Tetratricopeptide repeat |
3.6e-09 |
| Pfam |
PF13431.1 |
Tetratricopeptide repeat |
1.6e-08 |
| Pfam |
PF12895.2 |
Anaphase-promoting complex, cyclosome, subunit 3 |
2.2e-20 |
| Pfam |
PF13428.1 |
Tetratricopeptide repeat |
1.5e-08 |
| Pfam |
PF13424.1 |
Tetratricopeptide repeat |
3.7e-18 |
| Pfam |
PF13432.1 |
Tetratricopeptide repeat |
6.6e-11 |
| Pfam |
PF00515.23 |
Tetratricopeptide repeat |
4.6e-20 |
| Pfam |
PF07720.7 |
Tetratricopeptide repeat |
0.0037 |
| Pfam |
PF13414.1 |
TPR repeat |
1.6e-21 |
| Pfam |
PF13371.1 |
Tetratricopeptide repeat |
1.7e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS205550PA |
| P. humanus |
PHUM228490-PA |
| A. gambiae |
AGAP004623 |
| M. musculus |
ENSMUSG00000038416 |
| D. plexippus |
DPOGS204128PA |
| T. castaneum |
TC030737 |
| H. sapiens |
ENSP00000252457 |
| N. vitripennis |
NV15134-PA |
| A. mellifera |
GB18057-PA |
| S. invicta |
SI2.2.0_09657 |
| A. aegypti |
AAEL003744 |
| H. sapiens |
ENSP00000252458 |
| B. mori |
BGIBMGA013609-TA |
| H. sapiens |
ENSP00000364461 |
| P. vanderplanki |
Pv.12937 |
| H. sapiens |
ENSP00000348554 |
| D. melanogaster |
FBgn0025781 |
| H. melpomene |
HMEL012904-PA |
| H. sapiens |
ENSP00000364457 |
| C. quinquefasciatus |
CPIJ008655 |
| H. sapiens |
ENSP00000353549 |
| H. sapiens |
ENSP00000364459 |