MidgeBase gene description page [Pn.11607]
Outline
| Gene ID | Pn.11607 |
| Type | Protein coding gene |
| Scaffold | PnScaf13937 |
| Start | 4024 |
| End | 5371 |
| Direction | + |
Sequence
Transcript: 969 (bp)
ATGCAAAAGACTGTGATTACACGGAAAGATGCACAAGAAGCAAAAATCAAAACTCGAGCAATGGCCAAAGCCAATGAGAAAAAGATATCGCTCGTTGAAGCTAAAAGAAACAGTCGTCAGAAAATGTTGCTCGCAAAAGCTAATGAGCCTTCTCCAACTGCTTCGGTCAAGGATATTTATGGAAATGCTTTAAGTGGCATTAGCATGGTGCGAGGTGAAACCGGTGTAATTTATCACAAGTCAATGACAAAGCACTACTGCTTGTGGGACCCAAATTATCCTGAGAACCCTGAAAGATTTACATCTGTGATAAATCGTTGTAATGAATTAAAGTTATTTGATCGATGTAAGCAATTGCACCCACGACTTGCTACAAAAGAAGAGATTTTGACTGTTCATACGAAAAAACACTATGAATTATTAGAATCTACGAATAACAGTACCAATGAGGACCAATTAGAAGAACTCTGCTCACATTTTGATGCAATTTACATAAACTCATCGACTTTCAACTTGTCACTCTTGGCATGCGGTTCAACTATTGAGCTCATTGACAATATTTTAGAAGGAAGAATTCAAAATGGTATGGCAATTATTCGACCTCCCGGACACCATGCAATGAAAGCGGAATTCAATGGATATTGCTTTTTCAATAATGTGGCTGTTGCCGCAAAACATGCACTCGACAAGAAGAACGTCAAAAAGATTTTAATAGTTGACTGGGACGTACATCACGGACAAGGTACACAGCGTGCATTTTATGACGACCCACGCGTCGTCTATTTCTCAATTCACCGCTTCGAAGATGGAACATTCTGGCCAAATCTGCGTGAATCGAATTTTGACTATATCGGAAACGGTGAAGGTGCTGGCAGAAACATTAACGTTCCCTTGAACAAGATTGGAATGACGAATGCCGATTATTTGGCAGTATTTCAGCAGCTCTTGTTACCCATCGCAATCGAGGTA
Protein: 323 (aa)
MQKTVITRKDAQEAKIKTRAMAKANEKKISLVEAKRNSRQKMLLAKANEPSPTASVKDIYGNALSGISMVRGETGVIYHKSMTKHYCLWDPNYPENPERFTSVINRCNELKLFDRCKQLHPRLATKEEILTVHTKKHYELLESTNNSTNEDQLEELCSHFDAIYINSSTFNLSLLACGSTIELIDNILEGRIQNGMAIIRPPGHHAMKAEFNGYCFFNNVAVAAKHALDKKNVKKILIVDWDVHHGQGTQRAFYDDPRVVYFSIHRFEDGTFWPNLRESNFDYIGNGEGAGRNINVPLNKIGMTNADYLAVFQQLLLPIAIEV
| Type | Start | End | Length |
| CDS |
4024 |
4026 |
3 |
| CDS |
4232 |
4414 |
183 |
| CDS |
4474 |
5010 |
537 |
| CDS |
5069 |
5081 |
13 |
| CDS |
5136 |
5368 |
233 |
| intron |
4027 |
4231 |
205 |
| intron |
4415 |
4473 |
59 |
| intron |
5011 |
5068 |
58 |
| intron |
5082 |
5135 |
54 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001862395 |
histone deacetylase [Culex quinquefasciatus] gb|EDS37000.1| histone deacetylase [Culex quinquefasciatus] |
1e-117 |
| InterPro |
IPR023801 |
Histone deacetylase domain |
|
| InterPro |
IPR000286 |
Histone deacetylase superfamily |
|
| Pfam |
PF00850.14 |
Histone deacetylase domain |
6.6e-66 |
| Pfam |
PF13765.1 |
SPRY-associated domain |
0.1 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000398801 |
| N. vitripennis |
NV50794-PA |
| H. sapiens |
ENSP00000393916 |
| P. vanderplanki |
Pv.08718 |
| H. sapiens |
ENSP00000392815 |
| A. mellifera |
GB15104-PA |
| H. sapiens |
ENSP00000365804 |
| H. sapiens |
ENSP00000397542 |
| H. sapiens |
ENSP00000334061 |
| H. melpomene |
HMEL009651-PA |
| D. melanogaster |
FBgn0026428 |
| H. sapiens |
ENSP00000394377 |
| M. musculus |
ENSMUSG00000062906 |
| A. aegypti |
AAEL001069 |
| H. sapiens |
ENSP00000403370 |
| H. sapiens |
ENSP00000406150 |
| H. sapiens |
ENSP00000402751 |
| H. sapiens |
ENSP00000365831 |
| T. castaneum |
TC014236 |
| H. sapiens |
ENSP00000402189 |
| D. plexippus |
DPOGS215725PA |
| S. invicta |
SI2.2.0_07643 |
| H. sapiens |
ENSP00000216271 |
| P. humanus |
PHUM538580-PA |
| H. sapiens |
ENSP00000343540 |
| H. sapiens |
ENSP00000365795 |
| C. quinquefasciatus |
CPIJ012311 |
| B. mori |
BGIBMGA005759-TA |
| A. gambiae |
AGAP000532 |
| H. sapiens |
ENSP00000398566 |