MidgeBase gene description page [Pn.11583]
Outline
| Gene ID | Pn.11583 |
| Type | Protein coding gene |
| Scaffold | PnScaf13896 |
| Start | 4585 |
| End | 5789 |
| Direction | + |
Sequence
Transcript: 975 (bp)
ATGTTTTCAGCATTAAAAAAGCCGTCATTCGTGTGGACCTCAGGAATATTAGCCGGACTCGGAGGAATCTTCATAATAAAAGACTCTGTGCAAGGAGAACGCTTCAAGAAACCAATACTCGTCGAAAAGAAGGTCATAATAGTGACCGGTGCATCTAGCGGAATCGGAAAAGAAACTGCAAGGAATTTAGCAAAGCGAAAAGGAACAATTTACTTGGCGTGCCGGGATCTCAAAAAATGCGAGGAGGCCCGCAAGGAAATCGTCTTGTCGACGAAGAACAAAAATGTCTACTGTCGCGAACTCGATTTGGCCTCCTTCTCATCCATCAAAAGCTTCGTCAAACGCTTCAAATCGGAGCAAAATAGACTCGACATTCTCATAAACAACGCGGGTGTGATGCGAATACCGGAGCGACACACAACTTTGGAAGGCTTCGAGATGCAAGTCGGAACAAATCATCTCGGCCATTTCCTGCTGACAAATCTCCTCTTAGACTATCTCAAAGCATCAGCTCCGGCGAGGATTATCAACGTCTCGAGCATAGCCCATACTCGGGGTGAAATCAACACGGCAGACTTTAATAGCGAGAAATCTTACGATCCCAAGAAGGCTTATGAGATGTCCAAGTTATGCAACGTACTTTTCACAAGAGAACTCTCTAAGAGGCTCGAAGGAACGGGTGTTACGGCCAACAGCCTTCACCCCGGAATTGTTGACACAGAACTCATGAGGCACATGGGAGTAGTTAGTTCATTCTTTGGAAAAATATTTGTCTATCCATTTTTGTGGATTTTCACTAAGAAACCGGAGGCTGGCGCGCAAACGTCGCTCTATTGCGCACTCGATCCAGAATTGGAGAAGGTGTCGGGAGAGTACTTTGCAGACTGCAAAAAGGCTGAGATGGCCGATCAGGCCAAAGACGATAAGATGGCAGAGTGGCTTTGGAAGCTTAGCGAAAAGTGGTGCAGACTAGCT
Protein: 325 (aa)
MFSALKKPSFVWTSGILAGLGGIFIIKDSVQGERFKKPILVEKKVIIVTGASSGIGKETARNLAKRKGTIYLACRDLKKCEEARKEIVLSTKNKNVYCRELDLASFSSIKSFVKRFKSEQNRLDILINNAGVMRIPERHTTLEGFEMQVGTNHLGHFLLTNLLLDYLKASAPARIINVSSIAHTRGEINTADFNSEKSYDPKKAYEMSKLCNVLFTRELSKRLEGTGVTANSLHPGIVDTELMRHMGVVSSFFGKIFVYPFLWIFTKKPEAGAQTSLYCALDPELEKVSGEYFADCKKAEMADQAKDDKMAEWLWKLSEKWCRLA
| Type | Start | End | Length |
| CDS |
4585 |
4664 |
80 |
| CDS |
4892 |
5786 |
895 |
| intron |
4665 |
4891 |
227 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001960084 |
GF13188 [Drosophila ananassae] gb|EDV36906.1| GF13188 [Drosophila ananassae] |
1e-115 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
1.5e-07 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
0.00068 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.012 |
| Pfam |
PF04024.7 |
PspC domain |
0.3 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
3.5e-21 |
| Pfam |
PF08659.5 |
KR domain |
3.4e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000458197 |
| H. sapiens |
ENSP00000460614 |
| H. sapiens |
ENSP00000459453 |
| H. sapiens |
ENSP00000465812 |
| A. mellifera |
GB16118-PA |
| H. sapiens |
ENSP00000466795 |
| H. sapiens |
ENSP00000464895 |
| D. melanogaster |
FBgn0033205 |
| H. sapiens |
ENSP00000466535 |
| N. vitripennis |
NV12761-PA |
| H. sapiens |
ENSP00000460561 |
| H. sapiens |
ENSP00000459463 |
| H. sapiens |
ENSP00000467668 |
| H. sapiens |
ENSP00000458549 |
| H. sapiens |
ENSP00000459071 |
| H. sapiens |
ENSP00000461544 |
| A. gambiae |
AGAP005980 |
| D. melanogaster |
FBgn0033203 |
| H. sapiens |
ENSP00000391121 |
| H. sapiens |
ENSP00000459824 |
| T. castaneum |
TC009139 |
| H. sapiens |
ENSP00000460719 |
| M. musculus |
ENSMUSG00000008435 |
| H. sapiens |
ENSP00000465084 |
| H. sapiens |
ENSP00000458820 |
| H. sapiens |
ENSP00000465839 |
| H. sapiens |
ENSP00000464979 |
| S. invicta |
SI2.2.0_12126 |
| H. sapiens |
ENSP00000466253 |
| H. sapiens |
ENSP00000461598 |
| D. plexippus |
DPOGS212868PA |
| H. sapiens |
ENSP00000458509 |
| H. sapiens |
ENSP00000466483 |
| D. melanogaster |
FBgn0050491 |
| C. quinquefasciatus |
CPIJ010835 |
| H. sapiens |
ENSP00000458188 |
| H. sapiens |
ENSP00000461889 |
| H. sapiens |
ENSP00000467892 |
| H. sapiens |
ENSP00000458561 |
| H. sapiens |
ENSP00000459757 |
| H. sapiens |
ENSP00000464752 |
| T. castaneum |
TC010879 |
| D. plexippus |
DPOGS208721PA |
| D. melanogaster |
FBgn0033204 |
| H. melpomene |
HMEL015271-PA |
| H. sapiens |
ENSP00000465264 |
| H. sapiens |
ENSP00000465615 |
| H. sapiens |
ENSP00000464900 |
| H. sapiens |
ENSP00000465538 |
| H. sapiens |
ENSP00000458996 |
| H. sapiens |
ENSP00000458148 |
| H. sapiens |
ENSP00000460159 |
| D. melanogaster |
FBgn0050495 |
| H. sapiens |
ENSP00000379547 |
| H. sapiens |
ENSP00000461020 |
| H. sapiens |
ENSP00000459764 |
| P. humanus |
PHUM452490-PA |
| B. mori |
BGIBMGA000813-TA |
| A. aegypti |
AAEL002493 |
| H. sapiens |
ENSP00000465209 |
| H. sapiens |
ENSP00000291892 |
| H. sapiens |
ENSP00000459082 |
| H. sapiens |
ENSP00000466631 |
| P. vanderplanki |
Pv.04117 |
| H. sapiens |
ENSP00000458569 |