MidgeBase gene description page [Pn.11501]
Outline
| Gene ID | Pn.11501 |
| Type | Protein coding gene |
| Scaffold | PnScaf13627 |
| Start | 558 |
| End | 10302 |
| Direction | - |
Sequence
Transcript: 1032 (bp)
ATGCTTTATGAGTTCGGGAAAGTTCAGAGAGCCCGCGTTGCGATGGAAGTCTCGTACGGCTTCAGGGGCGAATTAGCGAGATATATTTCGACTGCTTTCGAAGCCAACTCATTTCACATTCACAAAAATTTCTTTTTTCAAATTCAGACAAAGTTCAACAAAATCTACGCCAACAACGTTGAGGAATTTCGACGCTATCGAATATTTTCTGAGAATCTTCAGAAAATAAGAAATTTCAACGAAAATGGAAATCACTCGTTTTCGCTGGACATCAATCAATTCGCAGACATGACGAACAAGGAATTTTCTCAAAAAATGAAAAGTTTGAAACCGTCAAAAAATTCCTCCAGTATAAAGACAAGTTCGCTCAACTTAGAGCAGGTCAAGAATCTTCCAGAGTCAGTGGATTGGCGTAAAATGGGCGCCGTCACTCCAGTGAAAGATCAAGGCATCTGTGGCAGCAGTTATGCGTATGCAGCAACGGCAGCACTAGAGTCTGTTATCTTTAGAAAAACCGGCAAACTCGTTTCCCTCTCTGAAAAATACATCATGGACTGTGTTTACGGTGCTCAAAGCTGTGCAGGAGGTTCCCTTGATGAGGTCTTTGGATACATGTCGGTTCACGGAATTCTGTTAAACTCAACGTATGAAAGTTTATCAAAATGCGATTTCGACCGCAAGAAGAGCATTGCAAACATTTTGAGTGTAAATATTGTTGAAACGGGCAGCGAAACTGACCTTCAAGCCGCTGTCGCTCTCCTTGGACCTGTTGTTGCAGTCATTGACGCTGAACCTCTGCAACTATACAATGGTGGCATCCTCGACGATCCTCAGTCCACACAAAACATCAATCACGCCATTGTTGTTGTGGGTTATGGAGCAGAGAATGGGCGAGACTTTTGGATAATAAAAAACAGCTGGGGAGATTCTTGGGGAGAGAAAGGTTACTTAAAATTGGCTAGAAATAAAAATAATCAATGTGGAATCGGAAAATACTTCTCCGTTGTGACCATCTCTAAAGTAAACAGTGAA
Protein: 344 (aa)
MLYEFGKVQRARVAMEVSYGFRGELARYISTAFEANSFHIHKNFFFQIQTKFNKIYANNVEEFRRYRIFSENLQKIRNFNENGNHSFSLDINQFADMTNKEFSQKMKSLKPSKNSSSIKTSSLNLEQVKNLPESVDWRKMGAVTPVKDQGICGSSYAYAATAALESVIFRKTGKLVSLSEKYIMDCVYGAQSCAGGSLDEVFGYMSVHGILLNSTYESLSKCDFDRKKSIANILSVNIVETGSETDLQAAVALLGPVVAVIDAEPLQLYNGGILDDPQSTQNINHAIVVVGYGAENGRDFWIIKNSWGDSWGEKGYLKLARNKNNQCGIGKYFSVVTISKVNSE
| Type | Start | End | Length |
| CDS |
561 |
1155 |
595 |
| CDS |
1214 |
1527 |
314 |
| CDS |
10180 |
10302 |
123 |
| intron |
1156 |
1213 |
58 |
| intron |
1528 |
10179 |
8652 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
CAE47501 |
cathepsin L-like proteinase [Diabrotica virgifera virgifera] |
2e-62 |
| InterPro |
IPR013128 |
Peptidase C1A, papain |
|
| InterPro |
IPR013201 |
Proteinase inhibitor I29, cathepsin propeptide |
|
| InterPro |
IPR025661 |
Cysteine peptidase, asparagine active site |
|
| InterPro |
IPR025660 |
Cysteine peptidase, histidine active site |
|
| InterPro |
IPR000668 |
Peptidase C1A, papain C-terminal |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008234 |
cysteine-type peptidase activity |
|
| Pfam |
PF03051.10 |
Peptidase C1-like family |
0.00033 |
| Pfam |
PF08246.7 |
Cathepsin propeptide inhibitor domain (I29) |
6.4e-13 |
| Pfam |
PF00112.18 |
Papain family cysteine protease |
1.3e-61 |
| Pfam |
PF13529.1 |
Peptidase_C39 like family |
0.07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes