MidgeBase gene description page [Pn.11488]
Outline
| Gene ID | Pn.11488 |
| Type | Protein coding gene |
| Scaffold | PnScaf13598 |
| Start | 18 |
| End | 1891 |
| Direction | - |
Sequence
Transcript: 846 (bp)
ATGGAGTACCTGGACATCGTGAAGGAGATCAAGACGACCATCAAGGACCCAGTCGGCATGTCCGAGATCTTCGGCGACCGGCTGTTTGTGAAGCCAAAGGATGCGCGCTTCAAGGACTTTCCCGCGTCCGTGCACAGCAAGTCATTCTTGGAGGACATCAAGCGCACCAAGAACTTCAAGGTCTACGAGGACGACGTGTGGCTCATTGGCTTCCCGCGCAGCGGCACAACCCTCATGCAGGAAATTTTGTGGCTCATCGTCAACGACTTCAACTTCGAGGCCGCCAAGTCCAAGGACACCTACAACCGCGCACAGTGGTTCGAATACTTCAACCTGCTGCACAAACTGCAGGGCGTCCCTTATGACTACCAAGACCATATGCCACGCCCGCGCGTGTTCAAGACCCACATGCCGGTCGAGTACTTGCCCGACCAGATCTGGACGGTCAAGCCCAAGATGGTGCACATTTGCCGCGACATCAAGGACGTCGCCATTTCGACATACTACTGGCGCAAAAACACCGTCCATGATGACGTCGGCACCATCGAGGACCACTTCGAGGACATTCTGAATGACAGAACCTGGTACACGCCGTACCGCGAGCATCTCCTCAACTACCAAAACATCCCGGACTACCCGAACATCTACTTCGTGACCTACGAGGAGCTGCTGGCCGACAAGCCCGGCACCGTCAGGAAGATCGCCGAGTTCTTGGGCAAGCCGATCAGCGACGAGAACCTCCAGGGACTTCTCGACCACATCAAGTTCGACAAGATGAAGACAAGGCGACCAACATGCAGCACTATCTGCAGCAGTTCAACGAGATTTCGAACCACGACCGCCCGG
Protein: 282 (aa)
MEYLDIVKEIKTTIKDPVGMSEIFGDRLFVKPKDARFKDFPASVHSKSFLEDIKRTKNFKVYEDDVWLIGFPRSGTTLMQEILWLIVNDFNFEAAKSKDTYNRAQWFEYFNLLHKLQGVPYDYQDHMPRPRVFKTHMPVEYLPDQIWTVKPKMVHICRDIKDVAISTYYWRKNTVHDDVGTIEDHFEDILNDRTWYTPYREHLLNYQNIPDYPNIYFVTYEELLADKPGTVRKIAEFLGKPISDENLQGLLDHIKFDKMKTRRPTCSTICSSSTRFRTTTAR
| Type | Start | End | Length |
| CDS |
21 |
85 |
65 |
| CDS |
217 |
391 |
175 |
| CDS |
501 |
783 |
283 |
| CDS |
1569 |
1891 |
323 |
| intron |
86 |
216 |
131 |
| intron |
392 |
500 |
109 |
| intron |
784 |
1568 |
785 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865949 |
sulfotransferase 1A1 [Culex quinquefasciatus] gb|EDS42513.1| sulfotransferase 1A1 [Culex quinquefasciatus] |
1e-37 |
| InterPro |
IPR000863 |
Sulfotransferase domain |
|
| Gene Ontology(MF) |
GO:0008146 |
sulfotransferase activity |
|
| Pfam |
PF13469.1 |
Sulfotransferase family |
0.00013 |
| Pfam |
PF00685.22 |
Sulfotransferase domain |
6e-49 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.10646 |
| Pn.14902 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.02802 |
| P. vanderplanki |
Pv.12026 |