MidgeBase gene description page [Pn.11473]
Outline
| Gene ID | Pn.11473 |
| Type | Protein coding gene |
| Scaffold | PnScaf13589 |
| Start | 605 |
| End | 3105 |
| Direction | + |
Sequence
Transcript: 1602 (bp)
ATGGTCAAAAACTGCGCACTTTTGACGGCGCTCGCCACTTCACTGCTTTCCGCCGTTTCCGCGCAGCAGCCGACGTGCGACTTCCGCATGACCGGCGTCTACTACACGTGCCGGCTCACGATCTTCAACTACCAGGGCCTCGACAACTTCACCGCCATCGCGGGCACTCACCTGGAGGGCAAGAGCGACAGTGACGTCACCGGCTTAAATCTTTTAGACGGCGCCACTGCCGTCGTGCCTCAGATTCTGTGCCGCCAGTTCGGCAACCTCCGCGTGGTGGACTTCAGCAATGCCGGCATCGAGCGCGTCACCGAGAGCTCCTTCGGCGAGTGCCGCGAGCTCGAGTGGCTGCGGCTGTGGAACAACCGACTCGGCGACGTCGCCGCGCGCACTTTCGAGCGAAACTCGAAGCTCGCCTACCTCGACCTCGACGGCAACTCGCTGACCACGCTGCCCGAGCACGTCTTCGCCAATCTCACGCTCCTCGGGTGGCTCGACCTGCCCAACAACCCGTTCGTTGACCTGCCGAGCGGAGTCTTTCGGTCGCTGCGCAACCTCAGATGGCTGGACCTCAGCAACTGCAACATCGCGACACTCGACGCCGCGTGGTTTGCGACGCTCGAGAACCTCGAAGGGCTTTTCCTCGTCTTCAACACCTTCAGCGTCATCGATGCCGACAAGTTTGCGGCGTTGCGCAACCTGAGGACGCTCGACCTCAGCCACGTGCTCTCACCGACCGGCATTCTCTTCATCCACCCGCAGGCGTTTAGCGCGCTCGGCCGCCTCGAGACGCTCGACATGACGGACATGCAGCTGACGGAGATCGACGCGCGCTGGTTCGCCGCGACGACGGCGCTCATCGAGGTTTACTTCAACTTCAACGCCATCGACAGTCTGCCGGCGCGGACCTTCGAGCGGGTCGCGACGCTGGCGTCGGCAAATTTCTGGTCGAATCGGCTGAGGGTCGTGCGTAGGAGCTCGTTCGGGAACGTTGCCGACCTGCGGATGCTCGACCTCGACTCGAACAATGTTCAGGCGCTCGACCGTGCGCTCATCGAGGACGCCGTCGGGCTCTTCACCGTCTACTTTGACTTCAATGTGTGCGCGAGTCTGACGATGGAAAATTTCTTGCTGTTCCGCGAGCAATTCGTCCAGGAGCTCGCCGGGTGCTTTGTGAATGCCGAGAATGGCGCAGATTTGGTCACACCAGCAAGCACCGCCTACAACTTCCTACCGGCATCGCTGTCCGGCATAGACATCCAAGTCTCCTCGTCTTCGACGGCAATCCAAATCGCGCTGACGCCCTTCGACTTCGCGTGGACGCCGATGCTGGAGGTGATCATTGGAGCGGCGAACAACACGCGCTCGGTGATCAGGCGGAACCGCGAGACGGACGTCGTGACGGTGCCGACGCCGGGCATCCTCAGGGCGGGCCAGTGGAACGGCTTCAGGATTTCGTGGGCCAACCACGCCGTGCTGGTGTTCCGAGAGGGCGACGAATGGCCCTTCATGGGCTTCACCATGGTCGACTTCTTCCCCGTCAACTTCTACGGCCTCCGATCGCCTGACGATCGAGCTTCTTGGTTCATTCTTCCGGTTGAA
Protein: 534 (aa)
MVKNCALLTALATSLLSAVSAQQPTCDFRMTGVYYTCRLTIFNYQGLDNFTAIAGTHLEGKSDSDVTGLNLLDGATAVVPQILCRQFGNLRVVDFSNAGIERVTESSFGECRELEWLRLWNNRLGDVAARTFERNSKLAYLDLDGNSLTTLPEHVFANLTLLGWLDLPNNPFVDLPSGVFRSLRNLRWLDLSNCNIATLDAAWFATLENLEGLFLVFNTFSVIDADKFAALRNLRTLDLSHVLSPTGILFIHPQAFSALGRLETLDMTDMQLTEIDARWFAATTALIEVYFNFNAIDSLPARTFERVATLASANFWSNRLRVVRRSSFGNVADLRMLDLDSNNVQALDRALIEDAVGLFTVYFDFNVCASLTMENFLLFREQFVQELAGCFVNAENGADLVTPASTAYNFLPASLSGIDIQVSSSSTAIQIALTPFDFAWTPMLEVIIGAANNTRSVIRRNRETDVVTVPTPGILRAGQWNGFRISWANHAVLVFREGDEWPFMGFTMVDFFPVNFYGLRSPDDRASWFILPVE
| Type | Start | End | Length |
| CDS |
605 |
1164 |
560 |
| CDS |
1499 |
2133 |
635 |
| CDS |
2632 |
3001 |
370 |
| CDS |
3066 |
3102 |
37 |
| intron |
1165 |
1498 |
334 |
| intron |
2134 |
2631 |
498 |
| intron |
3002 |
3065 |
64 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFW41510 |
predicted protein [Capsaspora owczarzaki ATCC 30864] |
3e-26 |
| InterPro |
IPR022041 |
Farnesoic acid O-methyl transferase |
|
| InterPro |
IPR003591 |
Leucine-rich repeat, typical subtype |
|
| InterPro |
IPR001611 |
Leucine-rich repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
4.9e-45 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
2.7e-25 |
| Pfam |
PF12248.3 |
Farnesoic acid 0-methyl transferase |
2.6e-18 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
1e-06 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
4.8e-19 |
| Pfam |
PF13306.1 |
Leucine rich repeats (6 copies) |
7.5e-16 |
| Pfam |
PF13516.1 |
Leucine Rich repeat |
1.9e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06954 |