MidgeBase gene description page [Pn.11413]
Outline
| Gene ID | Pn.11413 |
| Type | Protein coding gene |
| Scaffold | PnScaf13472 |
| Start | 18650 |
| End | 23854 |
| Direction | + |
Sequence
Transcript: 1626 (bp)
ATGTCAAACGATAATCTTCAAATGCACCAAATTAATTCCACTTCAACGATTGGCGAGACATCGCTTACATCGAATCCCAGTACAGCGTCGATGGCACCAAAGTCCGCCAATGTGCAGTTCGTGAGCGACTCACCGATTACGGATCCCGGACAGACCACCAAGGAGAAGGATAAAGATGTGAAAAACATTTCGAGTGCCCTTAAGAAATCAAGTCGCTATCGAAGTCGCAGTCTTTCGGCATCATCAACTGACTCGTACAGTTCTGCATCTTACACTGGAAGCTCGAGTGAGGACGATGATGTATCGCCTCGTGAGAAGATCCAAAGTAATTCGAAGGGCTTTGCGGATTTCTGCGTGAGAAATATCCAGCAGCATGCATTTGGTCGACGCGAAATCGAAATTGCGGAGCAAGAAATGCCCGGAATAATGGCGCTCCGCAAACGTGCTTCCGACGATAAGCCTCTCAAAAATGCAAAAATTGTTGGCTGTACACACGTTAATGCACAAACGGCGGTGCTCATTGAAACTTTGGCTGCTCTCGGAGCTTCTGTTCGTTGGGCAGCGTGCAATATTTATTCGACACAAAACGAGGTGGCCGCAGCACTGGCGGAGAGCGGTTTCAGTGTTTTTGCGTGGCGCGGCGAGACCGAGGAAGACTTCTGGTGGTGCATCGATAAATGTGTGAACGCCGAAAATTGGCAACCGAACATGATTCTCGATGATGGCGGTGATGCAACGCATCTGATGTTGAAAAAATATCCGGCCATGTTCAAGCTGGTGAAGGGAATTGTCGAGGAGAGTGTCACGGGAGTACATCGCCTTTATCAGTTGTCAAAGAGCGGAAAATTGACAGTTCCTGCGATGAATGTTCACGATTCCGTTATCAAGACGAAGTTTGATAACTTTTATAGTTGCAAGGAGAGCATCATAGATAGCTTAAAACGTTCGACTGACATCATGTTTTCGGGAAAGCAAGTCGCTCTGTGCGGCTACGGCGAAGTCGGCAAGGGCTGTTCGCAAGCTCTGAAAGCACTCGGCTGCATTGTCTACGTCACGGAAATCGATCCGATCTGCGCTCTCCAAGCGAGCGTCGACGGCTTTCGTGTTGTTAAGCTAAACGAAATCATACGAAATGTTGATATCGTAATCACGACGACGGGCAATAAGAGTGTTGTTACTCGAGAGCACATGGAAAAAATGAAGAACGGTTGCATCGTATGCAACATGGGTCATTCGAATACAGAAATCGATGTTAAGGATTTACGCACGCCCGATTTGACGTGGGAGAAGGTTCGTTCTCAAGTCGACCATATCATCTTTCCCGACGGAAAGCGAATAGTCTTATTAGCCGAAGGGCGTTTAGTAAATCTATCCTGCTCAAGTGTTCCTTCGTTCTGTGCGAGCATCACGGCTGCAACGCAGGCATTAGCGCTGATTGAACTTTACAATGCACAGCCTGGTCGCTATAAATGTGACGTTTATTTATTATCAAGAAAAATGGACGAGTATGTTGCAATTCTACATCTACCAACATTCGATGCGCACTTAACGGAGCTTTCTGACGAACAAGCGAAATACATGGGCCTCAGTAAGGCTGGTCCATTCAAGCCCAACTACTATCGCTAC
Protein: 542 (aa)
MSNDNLQMHQINSTSTIGETSLTSNPSTASMAPKSANVQFVSDSPITDPGQTTKEKDKDVKNISSALKKSSRYRSRSLSASSTDSYSSASYTGSSSEDDDVSPREKIQSNSKGFADFCVRNIQQHAFGRREIEIAEQEMPGIMALRKRASDDKPLKNAKIVGCTHVNAQTAVLIETLAALGASVRWAACNIYSTQNEVAAALAESGFSVFAWRGETEEDFWWCIDKCVNAENWQPNMILDDGGDATHLMLKKYPAMFKLVKGIVEESVTGVHRLYQLSKSGKLTVPAMNVHDSVIKTKFDNFYSCKESIIDSLKRSTDIMFSGKQVALCGYGEVGKGCSQALKALGCIVYVTEIDPICALQASVDGFRVVKLNEIIRNVDIVITTTGNKSVVTREHMEKMKNGCIVCNMGHSNTEIDVKDLRTPDLTWEKVRSQVDHIIFPDGKRIVLLAEGRLVNLSCSSVPSFCASITAATQALALIELYNAQPGRYKCDVYLLSRKMDEYVAILHLPTFDAHLTELSDEQAKYMGLSKAGPFKPNYYRY
| Type | Start | End | Length |
| CDS |
18650 |
18811 |
162 |
| CDS |
20479 |
20581 |
103 |
| CDS |
21665 |
21811 |
147 |
| CDS |
21896 |
22032 |
137 |
| CDS |
22376 |
22778 |
403 |
| CDS |
22842 |
23117 |
276 |
| CDS |
23311 |
23583 |
273 |
| CDS |
23727 |
23851 |
125 |
| intron |
18812 |
20478 |
1667 |
| intron |
20582 |
21664 |
1083 |
| intron |
21812 |
21895 |
84 |
| intron |
22033 |
22375 |
343 |
| intron |
22779 |
22841 |
63 |
| intron |
23118 |
23310 |
193 |
| intron |
23584 |
23726 |
143 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002427522 |
adenosylhomocysteinase, putative [Pediculus humanus corporis] gb|EEB14784.1| adenosylhomocysteinase, putative [Pediculus humanus corporis] |
0.0 |
| InterPro |
IPR020082 |
S-adenosyl-L-homocysteine hydrolase, conserved site |
|
| InterPro |
IPR000043 |
Adenosylhomocysteinase |
|
| InterPro |
IPR015878 |
S-adenosyl-L-homocysteine hydrolase, NAD binding domain |
|
| Gene Ontology(BP) |
GO:0006730 |
one-carbon metabolic process |
|
| Gene Ontology(MF) |
GO:0004013 |
adenosylhomocysteinase activity |
|
| Pfam |
PF07991.7 |
Acetohydroxy acid isomeroreductase, catalytic domain |
3.4e-06 |
| Pfam |
PF02254.13 |
TrkA-N domain |
0.0039 |
| Pfam |
PF01488.15 |
Shikimate / quinate 5-dehydrogenase |
0.00013 |
| Pfam |
PF01262.16 |
Alanine dehydrogenase/PNT, C-terminal domain |
0.07 |
| Pfam |
PF03949.10 |
Malic enzyme, NAD binding domain |
0.05 |
| Pfam |
PF00670.16 |
S-adenosyl-L-homocysteine hydrolase, NAD binding domain |
2.1e-77 |
| Pfam |
PF05221.12 |
S-adenosyl-L-homocysteine hydrolase |
2.5e-192 |
| Pfam |
PF02826.14 |
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
2.9e-11 |
| Pfam |
PF02882.14 |
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain |
5.7e-06 |
| Pfam |
PF13241.1 |
Putative NAD(P)-binding |
0.0023 |
| Pfam |
PF03446.10 |
NAD binding domain of 6-phosphogluconate dehydrogenase |
0.025 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV13976-PA |
| T. castaneum |
TC001438 |
| C. quinquefasciatus |
CPIJ801893 |
| H. melpomene |
HMEL009358-PA |
| D. plexippus |
DPOGS211994PA |
| D. melanogaster |
FBgn0015011 |
| H. sapiens |
ENSP00000413639 |
| H. sapiens |
ENSP00000358814 |
| H. sapiens |
ENSP00000431787 |
| H. sapiens |
ENSP00000420459 |
| A. mellifera |
GB15919-PA |
| H. sapiens |
ENSP00000419346 |
| P. humanus |
PHUM326020-PA |
| H. sapiens |
ENSP00000377238 |
| M. musculus |
ENSMUSG00000027893 |
| D. melanogaster |
FBgn0035371 |
| P. vanderplanki |
Pv.05349 |
| S. invicta |
SI2.2.0_08970 |
| H. sapiens |
ENSP00000420801 |
| A. gambiae |
AGAP000792 |
| H. sapiens |
ENSP00000315931 |
| A. aegypti |
AAEL005524 |
| B. mori |
BGIBMGA009808-TA |
| H. sapiens |
ENSP00000352092 |
| H. sapiens |
ENSP00000405267 |