MidgeBase gene description page [Pn.11406]
Outline
| Gene ID | Pn.11406 |
| Type | Protein coding gene |
| Scaffold | PnScaf13454 |
| Start | 8382 |
| End | 9863 |
| Direction | + |
Sequence
Transcript: 1194 (bp)
ATGTGGATAACAATTAAGAACTTGCAGCAGCAAACCATTAAGCTAGAGTTCGATGAAACCCAGACGGTCCAGAAGCTCAAAGAGAAGATAGAATCAGAAATGGGCAAGGACTATCCGGCAGCACAGCAAAAGCTAATTTATGCAGGATGCATTCTCGACGATGATAAAACCATCGATAGTTATAAAGTGGATGAGAAGAAATTTATTGTAGTAATGGTCAAAAAGGCGTCCGTCGCCTCCTCGGCGGCCGCTCCCGAGAAAGAAGAGACACCAAAAACAGTTACAGCAACAACAACAACATCAGCAACAAAGGAATCAACAACGACTGAAAAGAAAGACGACACTTCACAGAAAACATCATCATCAACTTCAAATACCTCATCTCCGTCGAAAAGCGCCGCCGATCCGCCGAAGCAGACAGCACCTGCCGCCGCCGCAGCAGCAGCTACTCCCGCGGAGACGGCCAGCGGCGGCGTTGTGGGACAGTCACAAATCGCACTGGCCGAATCGAACTTGGTGATGGGCGAGAACTACAATGCAATGGTGCAGAACATCATGGAGATGGGCTACGACCGCGAGTCTGTCGTGCGCGCCCTCAACGCCAGCTTCAATAATCCGGAGCGAGCCGTAGAATATTTAATCACAGGAATTCCCGACATGGCCCTCCAAGACCGGCCAGCGCCGGTCGGCGGCAACGAGCAGAGTGGTCTCGGCGCTGCCGTCGAGCGCGCATCGAATCAGCCTAGCAGCGGCAGCGAGAGCGGTGGTGGCGGCGGCGGCAACGAGGACAGCCCGCTCGCATTCTTGCGGCGACAAGCGCAGTTTCAGCAGATGCGAAATGTGATTCAGCAAAATCCCGAGATGCTGAACGAGGTGTTGCAGCAAATCGGACAAACGAATCCGGCGCTCTTGCAGCTCATTTCGGAGAACCAGGAAGCTTTCGTTAACATGCTGAACGAGTCAGACGACGGGCGTCAGGCGCCGAGCGGCGGCAACGACGACGACGACAGGGGAAACTTTGGCGGACTTTTAGACGTCGGTTCAGTTCCCGAATTCACGCAACAGGATCGTGAGGCCATCGAGAGATTAAAGGCGCTCGGCTTTCCCGATGAGCTCGTCGTTCAAGCCTACATCGCATGCGAGAAGAACGAAAACTTGGCCGCCAATTTTCTTCTCTCGCAAACATTTGATGAT
Protein: 398 (aa)
MWITIKNLQQQTIKLEFDETQTVQKLKEKIESEMGKDYPAAQQKLIYAGCILDDDKTIDSYKVDEKKFIVVMVKKASVASSAAAPEKEETPKTVTATTTTSATKESTTTEKKDDTSQKTSSSTSNTSSPSKSAADPPKQTAPAAAAAAATPAETASGGVVGQSQIALAESNLVMGENYNAMVQNIMEMGYDRESVVRALNASFNNPERAVEYLITGIPDMALQDRPAPVGGNEQSGLGAAVERASNQPSSGSESGGGGGGNEDSPLAFLRRQAQFQQMRNVIQQNPEMLNEVLQQIGQTNPALLQLISENQEAFVNMLNESDDGRQAPSGGNDDDDRGNFGGLLDVGSVPEFTQQDREAIERLKALGFPDELVVQAYIACEKNENLAANFLLSQTFDD
| Type | Start | End | Length |
| CDS |
8382 |
8447 |
66 |
| CDS |
8581 |
8659 |
79 |
| CDS |
8736 |
9676 |
941 |
| CDS |
9753 |
9860 |
108 |
| intron |
8448 |
8580 |
133 |
| intron |
8660 |
8735 |
76 |
| intron |
9677 |
9752 |
76 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADM26628 |
nucleotide excision repair factor Rad23 [Polypedilum vanderplanki] |
1e-158 |
| InterPro |
IPR006636 |
Heat shock chaperonin-binding |
|
| InterPro |
IPR000449 |
Ubiquitin-associated/translation elongation factor EF1B, N-terminal |
|
| InterPro |
IPR004806 |
UV excision repair protein Rad23 |
|
| InterPro |
IPR015940 |
Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote |
|
| InterPro |
IPR000626 |
Ubiquitin |
|
| InterPro |
IPR015360 |
XPC-binding domain |
|
| InterPro |
IPR019955 |
Ubiquitin supergroup |
|
| InterPro |
IPR009060 |
UBA-like |
|
| Gene Ontology(BP) |
GO:0043161 |
proteasomal ubiquitin-dependent protein catabolic process |
|
| Gene Ontology(BP) |
GO:0006289 |
nucleotide-excision repair |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0003684 |
damaged DNA binding |
|
| Pfam |
PF04499.10 |
SIT4 phosphatase-associated protein |
0.4 |
| Pfam |
PF00627.26 |
UBA/TS-N domain |
6.3e-23 |
| Pfam |
PF05086.7 |
Dictyostelium (Slime Mold) REP protein |
0.12 |
| Pfam |
PF11679.3 |
Protein of unknown function (DUF3275) |
1.4 |
| Pfam |
PF13881.1 |
Ubiquitin-2 like Rad60 SUMO-like |
4.8e-07 |
| Pfam |
PF00240.18 |
Ubiquitin family |
6.3e-20 |
| Pfam |
PF05539.6 |
Pneumovirinae attachment membrane glycoprotein G |
0.21 |
| Pfam |
PF09280.6 |
XPC-binding domain |
8.3e-26 |
| Pfam |
PF07218.6 |
Rhoptry-associated protein 1 (RAP-1) |
0.22 |
| Pfam |
PF08418.5 |
DNA polymerase alpha subunit B N-terminal |
0.055 |
| Pfam |
PF04484.7 |
Family of unknown function (DUF566) |
0.23 |
| Pfam |
PF10500.4 |
Nuclear RNA-splicing-associated protein |
0.12 |
| Pfam |
PF09288.5 |
Fungal ubiquitin-associated domain |
0.02 |
| Pfam |
PF14327.1 |
Hinge domain of cleavage stimulation factor subunit 2 |
0.46 |
| Pfam |
PF11976.3 |
Ubiquitin-2 like Rad60 SUMO-like |
1.3e-07 |
| Pfam |
PF00794.13 |
PI3-kinase family, ras-binding domain |
4.8 |
| Pfam |
PF05109.8 |
Herpes virus major outer envelope glycoprotein (BLLF1) |
0.0023 |
| Pfam |
PF13908.1 |
Wnt and FGF inhibitory regulator |
0.89 |
| Pfam |
PF10302.4 |
DUF2407 ubiquitin-like domain |
9.4e-05 |
| Pfam |
PF09579.5 |
Sporulation protein YtfJ (Spore_YtfJ) |
0.069 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS206093PA |
| S. invicta |
SI2.2.0_80108 |
| T. castaneum |
TC015662 |
| A. aegypti |
AAEL002077 |
| A. gambiae |
AGAP000733 |
| H. sapiens |
ENSP00000405623 |
| H. sapiens |
ENSP00000350708 |
| A. mellifera |
GB11667-PA |
| H. sapiens |
ENSP00000321365 |
| P. humanus |
PHUM577750-PA |
| M. musculus |
ENSMUSG00000028426 |
| B. mori |
BGIBMGA006819-TA |
| P. vanderplanki |
Pv.11036 |
| M. musculus |
ENSMUSG00000003813 |
| H. sapiens |
ENSP00000467024 |
| H. sapiens |
ENSP00000468674 |
| N. vitripennis |
NV10529-PA |
| D. melanogaster |
FBgn0026777 |