MidgeBase gene description page [Pn.11375]
Outline
| Gene ID | Pn.11375 |
| Type | Protein coding gene |
| Scaffold | PnScaf13308 |
| Start | 136 |
| End | 606 |
| Direction | - |
Sequence
Transcript: 339 (bp)
ATGGCAGAGGAGAAGCAAGAAGAGTCATTAGGAGTAGAAAGATTATCAATTCAACCCGATAAGCCTGCAGAAATCGTGAAAATCGACATACTGTTAAATGCCGCAGGAAATGCTCCAATAATGAAACAAAGAAAATGGACAGTCGACTGGATGAAGGATATATCGTGGGTCAGCAAATTCATCCACAAATACTTAAAGCTAGAAGCTGAGGAAAAATTGTTCCTCTACATCAACCAAACGTTTGCACCTAGTCCTGATCAAATACTCAAAAACCTCTACGAGTGTTATGGAAGCCAAAACAAGCTGACGCTGCATTATTCAGTGAATCCAGCTTGGGGT
Protein: 113 (aa)
MAEEKQEESLGVERLSIQPDKPAEIVKIDILLNAAGNAPIMKQRKWTVDWMKDISWVSKFIHKYLKLEAEEKLFLYINQTFAPSPDQILKNLYECYGSQNKLTLHYSVNPAWG
| Type | Start | End | Length |
| CDS |
139 |
258 |
120 |
| CDS |
318 |
454 |
137 |
| CDS |
525 |
606 |
82 |
| intron |
259 |
317 |
59 |
| intron |
455 |
524 |
70 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR26801 |
hypothetical protein AND_25873 [Anopheles darlingi] |
2e-32 |
| InterPro |
IPR007242 |
Autophagy-related protein 12 |
|
| Gene Ontology(BP) |
GO:0000045 |
autophagic vacuole assembly |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Pfam |
PF04110.8 |
Ubiquitin-like autophagy protein Apg12 |
2e-34 |
| Pfam |
PF02991.11 |
Autophagy protein Atg8 ubiquitin like |
6.7e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV10360-PA |
| A. aegypti |
AAEL009089 |
| H. sapiens |
ENSP00000274459 |
| A. gambiae |
AGAP012847 |
| P. vanderplanki |
Pv.02054 |
| M. musculus |
ENSMUSG00000032905 |
| H. melpomene |
HMEL010445-PA |
| A. gambiae |
AGAP007296 |
| D. melanogaster |
FBgn0036255 |
| P. humanus |
PHUM235290-PA |
| C. quinquefasciatus |
CPIJ002100 |
| H. sapiens |
ENSP00000425107 |
| D. plexippus |
DPOGS201156PA |
| B. mori |
BGIBMGA003954-TA |
| T. castaneum |
TC007660 |