MidgeBase gene description page [Pn.11374]
Outline
| Gene ID | Pn.11374 |
| Type | Protein coding gene |
| Scaffold | PnScaf13306 |
| Start | 25405 |
| End | 26643 |
| Direction | - |
Sequence
Transcript: 1167 (bp)
ATGCCTATCGAAAACTTAGAGGAGCAAGGCTTGGAGAAGAACCCGAAATTGGAGCTAGCCCAATACAAATTTCTGCTTTCTATGCCAGAAAATCAAAACAATGGTGAATTGAAAGCGAAATTATTGGAAGAAATTAAGGCTGATTATATGGCACCGTGGTATGAGATTGTCTGTGCCGATCTCGGGTGGCCACTTGACCAACAGCTTCTTGCACAGATGAAAGAAGTCAATACGAAGAAATTAGAGGAATTAGATGCAGTTATCGAGGATGCCGAAAAAAATCTCGGCGAAATGGAAGTTCGTGAGGCAAACTTGAAAAAATCAGAGTACTTGTGTCGCATCGGTGATAAAAATGCTGCAGTGTCCGCATTCAGAAAAACCTACGAAAAGACCGTTTCACTCGGTCATCGACTCGACATAATTTTCCACAACATTCGTATCGGACTTTTCTTTCTCGATCACGATTTAATCACCCGCAATATTGAGAAAGCAAAGACCCTCATCGAAGAGGGCGGCGACTGGGATCGAAGAAATCGCTTGAAAGTCTACCAAGGCGTCTACTCTGTTGCGATTCGCGACTTTCGCGCCGCAGCCCAGTTCTTCTTAGACACCGTGAGCACGTTCACGAGCTATGAGCTGATGGACTATACAACTTTTGTTCGCTATACTGTCTACACTTCAATGATCAGCTTACCGCGCAATGAGCTTCGCGACAAAGTCATCAAAGGGGCTGAAATCCAGGAAGTCCTCCATCAATTGCCCGACGTCAAGGAATATCTCTTCTCGCTCTACAACTGTCACTACGCCGAGTTTTTCGTTAATCTCACAAAGGTTGAGACCTACTTGAAGGCAGACTACATGGCAAATCCGCACTACCGCTTCTACGTCCGTGAGATGAGGATTCTCGCCTACACTCAACTCCTCGAGTCGTATCGCTCGCTCACACTTCCTTACATGGCGGAAGCGTTCGGCGTCTCTGTCGATTACATCGATGCTGAGCTCTCGCGCTTCATTGCTGCCGGCCGGTTGCACTGCAAAATCGACAAAGTCGGAGGCATCGTTGAGACAAATAGACCGGATAGCAAGAACTACCAGTATCAGGCTACAATCAAGCAGGGTGATTTGTTGCTAAATCGTATCCAAAAACTCAGTCGCGTTATCAACATT
Protein: 389 (aa)
MPIENLEEQGLEKNPKLELAQYKFLLSMPENQNNGELKAKLLEEIKADYMAPWYEIVCADLGWPLDQQLLAQMKEVNTKKLEELDAVIEDAEKNLGEMEVREANLKKSEYLCRIGDKNAAVSAFRKTYEKTVSLGHRLDIIFHNIRIGLFFLDHDLITRNIEKAKTLIEEGGDWDRRNRLKVYQGVYSVAIRDFRAAAQFFLDTVSTFTSYELMDYTTFVRYTVYTSMISLPRNELRDKVIKGAEIQEVLHQLPDVKEYLFSLYNCHYAEFFVNLTKVETYLKADYMANPHYRFYVREMRILAYTQLLESYRSLTLPYMAEAFGVSVDYIDAELSRFIAAGRLHCKIDKVGGIVETNRPDSKNYQYQATIKQGDLLLNRIQKLSRVINI
| Type | Start | End | Length |
| CDS |
25408 |
26268 |
861 |
| CDS |
26338 |
26643 |
306 |
| intron |
26269 |
26337 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001845077 |
26S proteasome non-ATPase regulatory subunit 6 [Culex quinquefasciatus] gb|EDS39093.1| 26S proteasome non-ATPase regulatory subunit 6 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
|
| InterPro |
IPR000717 |
Proteasome component (PCI) domain |
|
| InterPro |
IPR019585 |
26S proteasome, regulatory subunit Rpn7 |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF10602.4 |
26S proteasome subunit RPN7 |
2.1e-59 |
| Pfam |
PF08165.6 |
FerA (NUC095) domain |
0.065 |
| Pfam |
PF01399.22 |
PCI domain |
3.4e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000295901 |
| A. mellifera |
GB17690-PA |
| P. humanus |
PHUM091510-PA |
| N. vitripennis |
NV14096-PA |
| A. gambiae |
AGAP002061 |
| H. melpomene |
HMEL007458-PA |
| T. castaneum |
TC006375 |
| P. vanderplanki |
Pv.05753 |
| D. plexippus |
DPOGS215809PA |
| H. sapiens |
ENSP00000377952 |
| H. sapiens |
ENSP00000419227 |
| C. quinquefasciatus |
CPIJ003351 |
| H. sapiens |
ENSP00000418695 |
| A. mellifera |
GB19406-PA |
| D. melanogaster |
FBgn0028688 |
| A. aegypti |
AAEL010048 |
| S. invicta |
SI2.2.0_01661 |
| M. musculus |
ENSMUSG00000021737 |
| B. mori |
BGIBMGA003212-TA |