MidgeBase gene description page [Pn.11371]
Outline
| Gene ID | Pn.11371 |
| Type | Protein coding gene |
| Scaffold | PnScaf13306 |
| Start | 18586 |
| End | 20560 |
| Direction | + |
Sequence
Transcript: 717 (bp)
ATGACTATCATCAATCAAATTTCAGCTGCACAGTATCACAAAGTAACTCATGTGGTATTTGACCTCGATGGACTTTTATTGGACACCGAAAAAATTTACGAGAAAATCGTCGAGAACTTGGCACAGAAATACGGAAAGCCATATCCATGGGATGTGAGAATGAAAATTTTGGGAACAACTGAGAGAAGAACATGTGAAATTGCCGTTAAGGAATTAGACTTGCCATGCACAGTAGATGACTTCCAGAGGCAATTTAAACAAAGCTGTCTTGATAACCTTGCCGACGTTTACTTGATGAAAGGTGCCGAGAGATTAATCAAACATTTACACAGAAGCAAAGTTCCATTCTGTCTCGCAACAAGCAGTTCGATAGAAAGTGTAGAAGTCAAGACTTCGCACTACAAAGAGCTGTTCAGCGTATTTCGTCACAAAGTCTGCGGAAGCACCGATCCGGAAGTGAAAGAGGGAAAGCCGGCACCCGACATATTCTTGGTCGCCGCAAAACGCTTCCCTGCCGAGCCACAAAATTGCCTTGTATTTGAAGATGCACCGAACGGAGTGAGAGCAGCCAGATCGGCAGGAATGCAGGTCGTCATGGTCCCCGATTCACACGTGACGGACAAACAGAAAGAAAATGCCACAGTTGTTCTCAAAGATTTGCTACATTTCAAGCCCGAAGACTTTGGACTGCCGCCTTTTCCCGTCGAGAACGAAGAG
Protein: 239 (aa)
MTIINQISAAQYHKVTHVVFDLDGLLLDTEKIYEKIVENLAQKYGKPYPWDVRMKILGTTERRTCEIAVKELDLPCTVDDFQRQFKQSCLDNLADVYLMKGAERLIKHLHRSKVPFCLATSSSIESVEVKTSHYKELFSVFRHKVCGSTDPEVKEGKPAPDIFLVAAKRFPAEPQNCLVFEDAPNGVRAARSAGMQVVMVPDSHVTDKQKENATVVLKDLLHFKPEDFGLPPFPVENEE
| Type | Start | End | Length |
| CDS |
18586 |
18667 |
82 |
| CDS |
19825 |
20043 |
219 |
| CDS |
20142 |
20557 |
416 |
| intron |
18668 |
19824 |
1157 |
| intron |
20044 |
20141 |
98 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003436463 |
AGAP003372-PB [Anopheles gambiae str. PEST] gb|EGK97236.1| AGAP003372-PB [Anopheles gambiae str. PEST] |
9e-79 |
| InterPro |
IPR006402 |
HAD-superfamily hydrolase, subfamily IA, variant 3 |
|
| InterPro |
IPR023214 |
HAD-like domain |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Pfam |
PF13344.1 |
Haloacid dehalogenase-like hydrolase |
0.00015 |
| Pfam |
PF13242.1 |
HAD-hyrolase-like |
1.2e-08 |
| Pfam |
PF00702.21 |
haloacid dehalogenase-like hydrolase |
1.3e-11 |
| Pfam |
PF13419.1 |
Haloacid dehalogenase-like hydrolase |
8.6e-24 |
| Pfam |
PF00857.15 |
Isochorismatase family |
0.046 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.04495 |
| Pn.00456 |
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL014646-PA |
| D. plexippus |
DPOGS202413PA |
| P. humanus |
PHUM075900-PA |
| S. invicta |
SI2.2.0_04250 |
| D. plexippus |
DPOGS204969PA |
| H. sapiens |
ENSP00000430995 |
| H. melpomene |
HMEL009458-PA |
| P. vanderplanki |
Pv.05750 |
| D. melanogaster |
FBgn0019982 |
| T. castaneum |
TC014458 |
| B. mori |
BGIBMGA010238-TA |
| S. invicta |
SI2.2.0_09504 |
| H. melpomene |
HMEL009459-PA |
| H. sapiens |
ENSP00000441208 |
| T. castaneum |
TC000686 |
| H. sapiens |
ENSP00000406260 |
| B. mori |
BGIBMGA010237-TA |
| H. sapiens |
ENSP00000396452 |
| A. gambiae |
AGAP003372 |
| D. plexippus |
DPOGS204688PA |
| H. sapiens |
ENSP00000370467 |
| C. quinquefasciatus |
CPIJ010605 |
| B. mori |
BGIBMGA003439-TA |
| A. mellifera |
GB18738-PA |
| N. vitripennis |
NV16201-PA |
| H. melpomene |
HMEL006282-PA |
| A. aegypti |
AAEL003006 |
| P. vanderplanki |
Pv.07983 |
| M. musculus |
ENSMUSG00000048875 |
| P. vanderplanki |
Pv.06983 |