MidgeBase gene description page [Pn.11356]
Outline
| Gene ID | Pn.11356 |
| Type | Protein coding gene |
| Scaffold | PnScaf13279 |
| Start | 83030 |
| End | 85744 |
| Direction | - |
Sequence
Transcript: 1551 (bp)
ATGACACAAATGACTCAAGAGGAGATTGTAACAAACACAAAAACGGTCCTGCAAGGTCTCGAGGCGCTGCGACATGAGCACATGTCGATCATGTCTGGCCTCACCGAGGGCAAAAAAGATCCCGACAAAGTCGACATCATTCAAAAGAACATTGAAAACATCGAACTAGGATTGGGCGAAGCTCAGGTTATTGTAGTGTTAGCGTCACATTTACAAAATATCGAAGCCGAGAAACAGAAATTGCGGACGCAAGTCCGGCGACTGTGTCAGGAGAATGCGTGGCTTCGAGACGAACTGGCGAATACGCAGCAAAAGCTGCAGACGTCCGAGCAAATGGTTGCACAACTGGAAGAGGAGAAGAAGCACTTGGACTTTATGCAGTCGGTCCGAAAATACGACGAGAATCAGGACGAGTCGAATGAGAACGAAAAGTCTCGCTCCGATCCTGTCGTGGAGCTCTTTCCAGAGGACGAGCAGGAGGACCGCAACAACATGTCTCCGACGCCGCCGAGTCAGTTTGCGAATCAGGCAAACGCAGGCTACGAAATTCCGGCTCGTCTTCGCACTCTCCATAACCTTGTGATCCAGTATGCTTCGCAGGGCCGCTACGAGGTCGCTGTTCCACTGTGCAAGCAGGCTCTCGAGGATCTCGAAAAGACGAGCGGGCACGACCATCCGGATGTCGCCACGATGCTCAACATTCTCGCTTTAGTCTACCGTGATCAGAATAAATACAAGGAGGCAGCGAACTTGCTAAACGACGCGCTAACCATTCGCGAGAAAACGCTCGGCGAGAATCATCCGGCTGTCGCAGCCACACTCAACAACTTGGCTGTCTTGTATGGAAAGCGAGGCAAGTACAAGGACGCAGAACCTCTGTGCAAGCGAGCACTGGAAATTCGCGAAAAAGTCCTCGGAAAGGATCATCCCGATGTAGCGAAGCAATTGAACAATTTGGCACTGCTGTGTCAAAATCAGGGCAAGTACGAGGAAGTTGAGCTGTACTACCAGCGGGCATTAGAAATTTATGAGCATAAACTTGGACCAGACGACCCCAACGTGGCAAAGACAAAGAACAATCTGGCCAGTTGCTATCTGAAGCAAGGAAAATACAAGGAAGCAGAGATTCTTTACAAGCAAGTTTTGACGCGCGCTCACGAAAGAGAGTTCGGAACTATAGACGGTGATAACAAGCCAATTTGGCAGGTCGCGGAGGAACGTGAGGAGAACAAGCACCGAAATCGTGAAAACACGCCGTATGGCGAATATGGAGGATGGCACAAGGCTGCTAAAGTCGACTCACCAACGGTTACGACGACACTGAAAAATTTGGGCGCACTCTATCGGCGCCAGGGCAAATACGAGGCAGCAGAAACGCTCGAAGACTGCGCCATGAGATCGAAGCGAGAAGCGTTAGACTTAGTGAAGCAGACTAAAGTGGCACAAATACTGGCGAGTGATGATAAACGACGACGTAATGTTCGTGGACCATCGGGTGATGGTGATCAATATGAAGGCATTGAAGATGCGAACCGTCGTTTATCGAAATCA
Protein: 517 (aa)
MTQMTQEEIVTNTKTVLQGLEALRHEHMSIMSGLTEGKKDPDKVDIIQKNIENIELGLGEAQVIVVLASHLQNIEAEKQKLRTQVRRLCQENAWLRDELANTQQKLQTSEQMVAQLEEEKKHLDFMQSVRKYDENQDESNENEKSRSDPVVELFPEDEQEDRNNMSPTPPSQFANQANAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVELYYQRALEIYEHKLGPDDPNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGTIDGDNKPIWQVAEEREENKHRNRENTPYGEYGGWHKAAKVDSPTVTTTLKNLGALYRRQGKYEAAETLEDCAMRSKREALDLVKQTKVAQILASDDKRRRNVRGPSGDGDQYEGIEDANRRLSKS
| Type | Start | End | Length |
| CDS |
83033 |
83173 |
141 |
| CDS |
83251 |
83454 |
204 |
| CDS |
84353 |
84580 |
228 |
| CDS |
84642 |
85433 |
792 |
| CDS |
85559 |
85744 |
186 |
| intron |
83174 |
83250 |
77 |
| intron |
83455 |
84352 |
898 |
| intron |
84581 |
84641 |
61 |
| intron |
85434 |
85558 |
125 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001662600 |
kinesin light chain 1 and [Aedes aegypti] gb|EAT35354.1| kinesin light chain 1 and [Aedes aegypti] |
0.0 |
| InterPro |
IPR002151 |
Kinesin light chain |
|
| InterPro |
IPR015390 |
Rabaptin, GTPase-Rab5 binding domain |
|
| InterPro |
IPR001440 |
Tetratricopeptide TPR-1 |
|
| InterPro |
IPR011990 |
Tetratricopeptide-like helical |
|
| InterPro |
IPR013105 |
Tetratricopeptide TPR2 |
|
| InterPro |
IPR015792 |
Kinesin light chain repeat |
|
| InterPro |
IPR013026 |
Tetratricopeptide repeat-containing domain |
|
| InterPro |
IPR019734 |
Tetratricopeptide repeat |
|
| Gene Ontology(CC) |
GO:0005871 |
kinesin complex |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0003777 |
microtubule motor activity |
|
| Pfam |
PF07719.12 |
Tetratricopeptide repeat |
1.4e-21 |
| Pfam |
PF13174.1 |
Tetratricopeptide repeat |
0.013 |
| Pfam |
PF13176.1 |
Tetratricopeptide repeat |
2.8e-30 |
| Pfam |
PF04781.7 |
Protein of unknown function (DUF627) |
0.054 |
| Pfam |
PF09311.6 |
Rabaptin-like protein |
2.1e-65 |
| Pfam |
PF06156.8 |
Protein of unknown function (DUF972) |
2.7 |
| Pfam |
PF13374.1 |
Tetratricopeptide repeat |
2.4e-64 |
| Pfam |
PF13431.1 |
Tetratricopeptide repeat |
7.8e-12 |
| Pfam |
PF13181.1 |
Tetratricopeptide repeat |
2.3e-12 |
| Pfam |
PF12329.3 |
TATA element modulatory factor 1 DNA binding |
0.00064 |
| Pfam |
PF01535.15 |
PPR repeat |
0.00026 |
| Pfam |
PF12895.2 |
Anaphase-promoting complex, cyclosome, subunit 3 |
1e-12 |
| Pfam |
PF13428.1 |
Tetratricopeptide repeat |
3.2e-14 |
| Pfam |
PF04910.9 |
Transcriptional repressor TCF25 |
0.0048 |
| Pfam |
PF13424.1 |
Tetratricopeptide repeat |
5.7e-71 |
| Pfam |
PF07721.9 |
Tetratricopeptide repeat |
5.5e-06 |
| Pfam |
PF13432.1 |
Tetratricopeptide repeat |
8.1e-23 |
| Pfam |
PF00515.23 |
Tetratricopeptide repeat |
4.5e-30 |
| Pfam |
PF07720.7 |
Tetratricopeptide repeat |
0.034 |
| Pfam |
PF13414.1 |
TPR repeat |
7.5e-27 |
| Pfam |
PF10516.4 |
SHNi-TPR |
0.012 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000377631 |
| B. mori |
BGIBMGA008408-TA |
| C. quinquefasciatus |
CPIJ002971 |
| H. sapiens |
ENSP00000408484 |
| H. sapiens |
ENSP00000341154 |
| P. vanderplanki |
Pv.06200 |
| H. sapiens |
ENSP00000314837 |
| A. gambiae |
AGAP010258 |
| H. sapiens |
ENSP00000418031 |
| N. vitripennis |
NV12595-PA |
| H. sapiens |
ENSP00000377629 |
| H. sapiens |
ENSP00000374394 |
| H. sapiens |
ENSP00000377620 |
| H. sapiens |
ENSP00000439065 |
| H. sapiens |
ENSP00000450648 |
| P. humanus |
PHUM287490-PA |
| H. sapiens |
ENSP00000377622 |
| H. sapiens |
ENSP00000340221 |
| H. sapiens |
ENSP00000259708 |
| T. castaneum |
TC007992 |
| H. sapiens |
ENSP00000399403 |
| H. sapiens |
ENSP00000246489 |
| A. aegypti |
AAEL012472 |
| H. sapiens |
ENSP00000417652 |
| H. sapiens |
ENSP00000412693 |
| M. musculus |
ENSMUSG00000003546 |
| H. sapiens |
ENSP00000334618 |
| A. mellifera |
GB13592-PA |
| H. sapiens |
ENSP00000450617 |
| S. invicta |
SI2.2.0_12960 |
| H. sapiens |
ENSP00000410358 |
| C. quinquefasciatus |
CPIJ015771 |
| H. sapiens |
ENSP00000377630 |
| H. sapiens |
ENSP00000334523 |
| M. musculus |
ENSMUSG00000024862 |
| H. sapiens |
ENSP00000414982 |
| H. sapiens |
ENSP00000451242 |
| H. sapiens |
ENSP00000395806 |
| H. sapiens |
ENSP00000452481 |
| H. sapiens |
ENSP00000452487 |
| H. melpomene |
HMEL007622-PA |
| H. sapiens |
ENSP00000369377 |
| D. plexippus |
DPOGS210015PA |
| D. melanogaster |
FBgn0010235 |
| H. sapiens |
ENSP00000450616 |