MidgeBase gene description page [Pn.11349]
Outline
| Gene ID | Pn.11349 |
| Type | Protein coding gene |
| Scaffold | PnScaf13279 |
| Start | 41672 |
| End | 52483 |
| Direction | - |
Sequence
Transcript: 1809 (bp)
ATGGATGCGATTAAGAAAAAAATGCAGGCAATGAAGCTTGAGAAGGACAACGCTTTAGATCGTGCCCTTCTCTGCGAACAACAAGCTCGCGATGCCAACACACGTGCCGAAAAGGCCGAGGAAGAGGCCCGCACATTGCAAAAGAAGATCCAGACCATCGAAAATGATTTGGATCAGACACAAGAGCAAGAAACTCTTGTCAATGGAAAGCTCGAGGAAAAGGAAAAGGCACTTCAAAATACTCATCCGAGTCCGCCCACGCTCTCGTCTGACCCAGTTGACTTGACGGTTTCGACATCGTCCGACACATCGAGTCAATCTGATCACCAGACGTTTCACAACCAAGATGACGGCCTGCGGGAGGAGTTTCAGGAGAACATATCGGACAGTGGCGGCGGCAGCAATAATAACAACAACAACAACAACACCTCAACAGCGAGTGATAAGAGAAGTTCAAAGGGCTCCGAGCCAAAGAGGAAGCGAAGCAAGGGTTCTCAGAACGACGTACTGAAGGTTGTGCAATCGAGCAGCAACGAGATTCTCAACAACATTAACGAGGACGACGACGCCGAGATGGTGGAGCTGGCGAAGCTGCGGTGCACGAGCGAGCGAACTGAAGTCATCGCCGAGCGCGAGCACCGGCGACAGAAGAAGTGCGCCGACTATCCGGGGCTCGCCTTTGGACGATCAATTTTTAGCTCCGATTCGATGATGAAATTTAATATTATTAGAAACGAATTACAAAATATCATGAATAACCAGCTGCGAAGGGCTGAATCAGAAGTCGCTGCTTTGAACCGTCGCATCCAACTTTTGGAAGAAGATCTCGAACGTTCCGAGGAACGTTTGGCTTCTGCTACCGCAAAGTTGTCAGAAGCATCAGCAGCTGCTGATGAATCTGAACGTGCCCGTAAAGTTCTTGAGAACCGTTCACTCGCCGATGAAGAACGTATGGATGCTCTTGAAAATCAATTGAAGGAAGCTCGCTTCCTCGCTGAAGAGGCCGACAAGAAATACGATGAGGTTGCACGTAAATTGGCTATGGTTGAGGCTGATCTTGAACGTGCAGAAGAGCGCGCAGAGGCTGGTGAAGCCAAGATTGTTGAACTTGAAGAAGAACTTCGCGTCGTTGGTAACAACTTGAAGTCATTGGAGGTGTCAGAAGAGAAGGCTGAAGCCAGAGCCGAGTTCGCTGAGCGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGACTTGAAGATGAACTAATCATTGCAAAGGAGCACTTTGCCGAAATCGGAGACGACCTCGACTTTACATTCGTTGACCTCATTGACGGAATCGACCCAATTTGGACATACCGCCGTCCAAAGCCACCAACTCCACCACCAAAAGAACCCTCGCCACCGCCAGTCAAGGCAGCCGCCGCTGCTGTTGTCGGCGCAGAACCCGGTGCGCCTGCTGCCGAGGGCGGCGTTTCCGTGGCAGTTGAGGGCGGTGTGCCGGCGGCAGAAGGCGCTGCTGCTGAGCCCCAAGCTCCGAAGGCACCCTCGCCCTTCGAGCTCAAGAAGCACTTCCCAGCTGACGCCGCCGAAGTTCCGTTCGTGCAGTCGCATGAGAGCTTAGCGGCCACTCCAAAGCAATCAGCTGAGCCTGAGCCCGCAAAGGAGCCTTCGGCTGAGCCAGCTCCGGAGACGCCTGCTGAGGCACCGGCTGCCGAAGCACCAGCCGCCGCCGAAGAAGCGCCAGCTGCCGCTGAAGAAACACCAGCGGCTGCCGCCGAAGAAGCTCCTGCCGCCCCCGCCGAAGAAGCACCCGCTGCCGCCGAA
Protein: 603 (aa)
MDAIKKKMQAMKLEKDNALDRALLCEQQARDANTRAEKAEEEARTLQKKIQTIENDLDQTQEQETLVNGKLEEKEKALQNTHPSPPTLSSDPVDLTVSTSSDTSSQSDHQTFHNQDDGLREEFQENISDSGGGSNNNNNNNNTSTASDKRSSKGSEPKRKRSKGSQNDVLKVVQSSSNEILNNINEDDDAEMVELAKLRCTSERTEVIAEREHRRQKKCADYPGLAFGRSIFSSDSMMKFNIIRNELQNIMNNQLRRAESEVAALNRRIQLLEEDLERSEERLASATAKLSEASAAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLERAEERAEAGEAKIVELEEELRVVGNNLKSLEVSEEKAEARAEFAERSVQKLQKEVDRLEDELIIAKEHFAEIGDDLDFTFVDLIDGIDPIWTYRRPKPPTPPPKEPSPPPVKAAAAAVVGAEPGAPAAEGGVSVAVEGGVPAAEGAAAEPQAPKAPSPFELKKHFPADAAEVPFVQSHESLAATPKQSAEPEPAKEPSAEPAPETPAEAPAAEAPAAAEEAPAAAEETPAAAAEEAPAAPAEEAPAAAE
| Type | Start | End | Length |
| CDS |
41675 |
42243 |
569 |
| CDS |
44041 |
44110 |
70 |
| CDS |
45658 |
45733 |
76 |
| CDS |
46732 |
46802 |
71 |
| CDS |
47913 |
48030 |
118 |
| CDS |
48525 |
48658 |
134 |
| CDS |
50388 |
50918 |
531 |
| CDS |
52244 |
52483 |
240 |
| intron |
42244 |
44040 |
1797 |
| intron |
44111 |
45657 |
1547 |
| intron |
45734 |
46731 |
998 |
| intron |
46803 |
47912 |
1110 |
| intron |
48031 |
48524 |
494 |
| intron |
48659 |
50387 |
1729 |
| intron |
50919 |
52243 |
1325 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_968504 |
PREDICTED: similar to AGAP001797-PA [Tribolium castaneum] |
1e-128 |
| InterPro |
IPR000533 |
Tropomyosin |
|
| Pfam |
PF06009.7 |
Laminin Domain II |
0.15 |
| Pfam |
PF07889.7 |
Protein of unknown function (DUF1664) |
2.2 |
| Pfam |
PF00261.15 |
Tropomyosin |
1.4e-76 |
| Pfam |
PF12718.2 |
Tropomyosin like |
2.9e-38 |
| Pfam |
PF01576.14 |
Myosin tail |
3.7e-05 |
| Pfam |
PF07888.6 |
Calcium binding and coiled-coil domain (CALCOCO1) like |
8.6 |
| Pfam |
PF10473.4 |
Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 |
0.093 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM400120-PA |
| M. musculus |
ENSMUSG00000032366 |
| B. mori |
BGIBMGA001587-TA |
| S. invicta |
SI2.2.0_05747 |
| P. vanderplanki |
Pv.02469 |
| H. sapiens |
ENSP00000339035 |
| H. sapiens |
ENSP00000453062 |
| A. aegypti |
AAEL002759 |
| H. sapiens |
ENSP00000385107 |
| A. mellifera |
GB10939-PA |
| D. melanogaster |
FBgn0004117 |
| C. quinquefasciatus |
CPIJ013361 |
| P. humanus |
PHUM400340-PA |
| D. plexippus |
DPOGS205419PA |
| C. quinquefasciatus |
CPIJ013364 |
| A. gambiae |
AGAP001799 |
| N. vitripennis |
NV12583-PA |
| N. vitripennis |
NV12582-PA |
| A. aegypti |
AAEL002761 |
| H. sapiens |
ENSP00000288398 |
| H. melpomene |
HMEL007151-PA |
| P. vanderplanki |
Pv.02468 |
| A. gambiae |
AGAP001797 |
| T. castaneum |
TC011461 |
| H. sapiens |
ENSP00000271850 |
| H. sapiens |
ENSP00000357516 |