MidgeBase gene description page [Pn.11342]
Outline
| Gene ID | Pn.11342 |
| Type | Protein coding gene |
| Scaffold | PnScaf13279 |
| Start | 1794 |
| End | 3141 |
| Direction | + |
Sequence
Transcript: 474 (bp)
ATGGCTGGCTTAGATGAAACCACTCCTGTCTATGGACCTTTCTTCGGCGTAATGGGAGCCGCAGCTGCAATTATCTTCAGCGCACTTGGAGCTGCCTACGGAACAGCCAAATCAGGCACGGGAATTGCGGCAATGAGTGTCATGAGACCCGAGTTGATTATGAAATCAATTATTCCCGTGGTCATGGCTGGTATTATTGCTATTTACGGATTGGTCGTTGCCGTTCTCATTGCTGGAGCCCTCGAAGAACCACCAAAATACAGTCTCTACAAGGGATTCATCCATCTCGGCGCTGGTCTTGCTGTCGGATTCTCGGGCTTAGCTGCTGGTTTTGCCATCGGTATTGTCGGTGATGCTGGTGTCCGAGGAACAGCTCAACAACCACGACTCTTCGTCGGTATGATTTTGATTCTGATTTTCGCCGAAGTATTGGGTCTTTATGGCTTAATTGTCGCCATTTACTTGTATACCAAA
Protein: 158 (aa)
MAGLDETTPVYGPFFGVMGAAAAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPPKYSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK
| Type | Start | End | Length |
| CDS |
1794 |
1875 |
82 |
| CDS |
2031 |
2220 |
190 |
| CDS |
2937 |
3138 |
202 |
| intron |
1876 |
2030 |
155 |
| intron |
2221 |
2936 |
716 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_001155531 |
V-type proton ATPase 16 kDa proteolipid subunit [Acyrthosiphon pisum] dbj|BAH71590.1| ACYPI003545 [Acyrthosiphon pisum] |
2e-74 |
| InterPro |
IPR002379 |
ATPase, F0/V0 complex, subunit C |
|
| InterPro |
IPR011555 |
ATPase, V0 complex, proteolipid subunit C, eukaryotic |
|
| InterPro |
IPR000245 |
ATPase, V0 complex, proteolipid subunit C |
|
| Gene Ontology(BP) |
GO:0015991 |
ATP hydrolysis coupled proton transport |
|
| Gene Ontology(CC) |
GO:0033179 |
proton-transporting V-type ATPase, V0 domain |
|
| Gene Ontology(CC) |
GO:0033177 |
proton-transporting two-sector ATPase complex, proton-transporting domain |
|
| Gene Ontology(MF) |
GO:0015078 |
hydrogen ion transmembrane transporter activity |
|
| Pfam |
PF07331.6 |
Tripartite tricarboxylate transporter TctB family |
3.1 |
| Pfam |
PF00137.16 |
ATP synthase subunit C |
5.4e-33 |
| Pfam |
PF01350.12 |
Flavivirus non-structural protein NS4A |
8.8 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000454796 |
| H. sapiens |
ENSP00000329757 |
| C. quinquefasciatus |
CPIJ011018 |
| P. vanderplanki |
Pv.02460 |
| A. aegypti |
AAEL000291 |
| H. sapiens |
ENSP00000457782 |
| N. vitripennis |
NV14984-PA |
| T. castaneum |
TC011025 |
| B. mori |
BGIBMGA001302-TA |
| H. sapiens |
ENSP00000454868 |
| A. mellifera |
GB19405-PA |
| M. musculus |
ENSMUSG00000024121 |
| D. plexippus |
DPOGS202679PA |
| P. humanus |
PHUM061100-PA |
| H. melpomene |
HMEL014521-PA |
| D. melanogaster |
FBgn0262736 |