MidgeBase gene description page [Pn.11327]
Outline
| Gene ID | Pn.11327 |
| Type | Protein coding gene |
| Scaffold | PnScaf13255 |
| Start | 6230 |
| End | 7528 |
| Direction | - |
Sequence
Transcript: 1113 (bp)
ATGATTTTGCTTGTTTTCGTCTGTGCTTACCTGCTCTCAGTCGGTGCAGATTGCCAATGCGTTCGATCGCTTACAACCGTTGTCGGCTCACAGGCTCCTTCAAAAATTTGTTCCGGGCAGCTCATTTTCGAGGACAACTTCAATCATATCGACAAATCGAAGTGGAAGTTCGAAAACACCCTTGCTGGAGGTGGAAACTGGGAGTTCCAGTGGTATCCGGGCAATGACCCAAACAACGCATTCACATCTAACGGAAACCTGCATATTGCGCCTACAACGACGGCGAGTGTTTTCGGGGAAAACTTTTTATCCACCCAAAAAGTGAAAATTCCAGCAAGCGAGTGCACTCAAGCGGACTGGTATGGCTGTGAGAGGCAGGGCACAAAGGACTACATCATCAACCCGGTAAGAAGCACGAAGATCGACACCCGTGACTCGTTCGCATTCAAGTATGGTGTGATGAAGATTCGAGCAAAACTTCCGGCCGGAGACTGGCTGTGGCCTGCACTGTGGTTGCTACCGAAAAAAAATGTCTACGGCGGTTGGCCTCGATCGGGCGAAATTGACTTGATGGAGTCGCGTGGCAACCGAAACTATTATCAAGGCAACCGGCATCTGGGTGTTGAGCAAGTGTCGAGCACGCTGCACTTTGGACCACGCTACGACTTCAATGGCTTCATGACGGCGCACGGTGAAAAATTCAGCCGTCCGGGCTTTAACGAAGACTTCCACGTGTACACGCTCGAATGGACGCCATGGAAAATAAAGTTCTCCGTTGATAACGACGTGATAGCGACAATTGATGCAGGCAACGGTTTCTGGGCACGTGCAAGCTTGTGGAACTCGGGAATGACGAATCCGTGGGCAAACGCCAGCAAAATGGCACCTTTCGACCAGGAATTTTATATCATCATGAATCTGGCGGTTGGCGGAACCAACGGATTCTTCCCGGACGATGCCGAAAACAGACCACGCAAGAAGCCATGGAAGAACAGCAGTGGAAGGGCGGCTGCAGATTTTTGGGAAAAGAAGAACGATTGGCTGCCGACATGGAATTTAAGAGTCAATGACGATTCTCACTTTCAAATTGACTACGTCAGAGTTTGGGCTTTG
Protein: 371 (aa)
MILLVFVCAYLLSVGADCQCVRSLTTVVGSQAPSKICSGQLIFEDNFNHIDKSKWKFENTLAGGGNWEFQWYPGNDPNNAFTSNGNLHIAPTTTASVFGENFLSTQKVKIPASECTQADWYGCERQGTKDYIINPVRSTKIDTRDSFAFKYGVMKIRAKLPAGDWLWPALWLLPKKNVYGGWPRSGEIDLMESRGNRNYYQGNRHLGVEQVSSTLHFGPRYDFNGFMTAHGEKFSRPGFNEDFHVYTLEWTPWKIKFSVDNDVIATIDAGNGFWARASLWNSGMTNPWANASKMAPFDQEFYIIMNLAVGGTNGFFPDDAENRPRKKPWKNSSGRAAADFWEKKNDWLPTWNLRVNDDSHFQIDYVRVWAL
| Type | Start | End | Length |
| CDS |
6233 |
6359 |
127 |
| CDS |
6420 |
6597 |
178 |
| CDS |
6669 |
6935 |
267 |
| CDS |
6988 |
7528 |
541 |
| intron |
6360 |
6419 |
60 |
| intron |
6598 |
6668 |
71 |
| intron |
6936 |
6987 |
52 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EHJ68551 |
beta-1,3-glucanase [Danaus plexippus] |
1e-111 |
| InterPro |
IPR008985 |
Concanavalin A-like lectin/glucanase |
|
| InterPro |
IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
|
| InterPro |
IPR000757 |
Glycoside hydrolase, family 16 |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Pfam |
PF00722.16 |
Glycosyl hydrolases family 16 |
2.3e-21 |
| Pfam |
PF13984.1 |
MsyB protein |
0.035 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.10433 |
| Pn.10432 |
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA000353-TA |
| A. aegypti |
AAEL003889 |
| A. aegypti |
AAEL009178 |
| A. gambiae |
AGAP002798 |
| C. quinquefasciatus |
CPIJ004323 |
| H. melpomene |
HMEL016918-PA |
| D. melanogaster |
FBgn0040322 |
| C. quinquefasciatus |
CPIJ004324 |
| A. gambiae |
AGAP004455 |
| P. vanderplanki |
Pv.17204 |
| C. quinquefasciatus |
CPIJ004325 |
| C. quinquefasciatus |
CPIJ003613 |
| C. quinquefasciatus |
CPIJ004320 |
| A. aegypti |
AAEL009176 |
| A. gambiae |
AGAP002796 |
| D. plexippus |
DPOGS215599PA |
| T. castaneum |
TC002295 |
| C. quinquefasciatus |
CPIJ004321 |
| A. gambiae |
AGAP002799 |
| P. vanderplanki |
Pv.07967 |
| P. vanderplanki |
Pv.07968 |