MidgeBase gene description page [Pn.11323]
Outline
| Gene ID | Pn.11323 |
| Type | Protein coding gene |
| Scaffold | PnScaf13254 |
| Start | 350 |
| End | 1404 |
| Direction | + |
Sequence
Transcript: 993 (bp)
ATGCAGTTCAACCGTCCAAAATCGCTGAACGCTATTAACTTCGAAATGTACACTTCAGCTTACGAATTGCTAAGAAAATACGAATCTGAGAAGAAGCTCATCATCTTTCGAGGAATCGAGAAGGCTTTCTCTGTTGGCGGCGACATGAAAAATAACGCCTTTGTCAATCTAGATCAAGCAAAAATTCTCTGCAGTTTACCATTGAAATCCTTCCGCTTAGTGCACAACTACAAGATTCCTTATGTTCCTCTGATCCATGGCCTGTGCTTTGGTGCCGGAGCAAACTACAGCGTCGCTGCAAAAAAGAATCGAGTAGTCACCGAAACTACAAATTTCGCCATGCCCGAAGCCCGCATCGGATTCTTTACGGACAACGGCTCGAGTTTTTTTCTCTCGCGGTTGCCTCACAATGTCGGCTACTACATGAGTCTGACGGCAACCACGATCACGGGTAGTGACATGATAAATATCGGTTTGGCCGACCACTTCGTTGAGAGCAAAAAGCTTGCAGAGCTCGAGAAATGTCTCATAGACTGCCGAGACAGCGAGGAAGTGGACAGTGTTCTCAAGAAATTTTCTTCGCCTCCGCCACCAAAATCCAGTCAACTGGATCAAATTTTACCAGAAATCGACAGATGCTTCAGTGGCGACTCGGTTGAGGAAATTTTTGAGAACCTCCATCTTAACGGTAGCGAGTGGGCGATGAGGACCATTAAGGTCATGAACGCGTTGTCACCGACTAGTCTTAAAATCTGTCATAAACTGCTTAGAACTGGGAAAAGTTTGGAACTGGATGACTGTCTCAAAATGGAATTTCGCTTAATGCTGAATTACGTTAATAACGGCGACATGCAGGAAGGAGTTCGAGCGATGCTCATTGACAAAGACAAAAAACCGAAGTGGAATCCACAGACGCTGAAGGAAGTTGAACCAGATTACATTGAACGTTTCTTTGCGCCACTAGGCGATGGGCTCGAACTTAAATTCGACGAA
Protein: 331 (aa)
MQFNRPKSLNAINFEMYTSAYELLRKYESEKKLIIFRGIEKAFSVGGDMKNNAFVNLDQAKILCSLPLKSFRLVHNYKIPYVPLIHGLCFGAGANYSVAAKKNRVVTETTNFAMPEARIGFFTDNGSSFFLSRLPHNVGYYMSLTATTITGSDMINIGLADHFVESKKLAELEKCLIDCRDSEEVDSVLKKFSSPPPPKSSQLDQILPEIDRCFSGDSVEEIFENLHLNGSEWAMRTIKVMNALSPTSLKICHKLLRTGKSLELDDCLKMEFRLMLNYVNNGDMQEGVRAMLIDKDKKPKWNPQTLKEVEPDYIERFFAPLGDGLELKFDE
| Type | Start | End | Length |
| CDS |
350 |
402 |
53 |
| CDS |
462 |
1401 |
940 |
| intron |
403 |
461 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADD18508 |
3-hydroxyisobutyryl-coenzyme A hydrolase [Glossina morsitans morsitans] |
1e-76 |
| InterPro |
IPR001753 |
Crotonase, core |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00378.15 |
Enoyl-CoA hydratase/isomerase family |
1.4e-23 |
| Pfam |
PF13766.1 |
2-enoyl-CoA Hydratase C-terminal region |
9.2e-40 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.06909 |
| Pn.09748 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.16455 |