MidgeBase gene description page [Pn.11313]
Outline
| Gene ID | Pn.11313 |
| Type | Protein coding gene |
| Scaffold | PnScaf13204 |
| Start | 480 |
| End | 1341 |
| Direction | - |
Sequence
Transcript: 234 (bp)
ATGAATGCGGCAAAAACCTCAGTGACACAGTTGCAAGCCGACTTCATTTATTTCGCCAGAGTGAACCCAAGAAAGCAGCGACGAGAGCGAACAACCTTCACACGAGCCCAGCTCGACGTGCTCGAGTCGCTTTTCGGCAAGACGAGATACCCCGACATTTTCATGCGCGAGGAGGTCGCCCTCAAGATCAATTTGCCCGAGTCGCGAGTTCAGCGCGAGAAGAGGAAGAAAAAA
Protein: 78 (aa)
MNAAKTSVTQLQADFIYFARVNPRKQRRERTTFTRAQLDVLESLFGKTRYPDIFMREEVALKINLPESRVQREKRKKK
| Type | Start | End | Length |
| CDS |
483 |
503 |
21 |
| CDS |
908 |
1062 |
155 |
| CDS |
1284 |
1341 |
58 |
| intron |
504 |
907 |
404 |
| intron |
1063 |
1283 |
221 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_310918 |
AGAP000215-PA [Anopheles gambiae str. PEST] gb|EAA06353.6| AGAP000215-PA [Anopheles gambiae str. PEST] |
9e-23 |
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF00046.24 |
Homeobox domain |
2.2e-13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000452336 |
| H. sapiens |
ENSP00000355631 |
| H. sapiens |
ENSP00000451357 |
| T. castaneum |
TC003355 |
| M. musculus |
ENSMUSG00000005917 |
| N. vitripennis |
NV16624-PA |
| H. sapiens |
ENSP00000451272 |
| P. humanus |
PHUM363310-PA |
| A. mellifera |
GB11566-PA |
| H. sapiens |
ENSP00000386185 |
| H. sapiens |
ENSP00000343819 |
| H. sapiens |
ENSP00000282549 |
| S. invicta |
SI2.2.0_12709 |