MidgeBase gene description page [Pn.11310]
Outline
| Gene ID | Pn.11310 |
| Type | Protein coding gene |
| Scaffold | PnScaf13195 |
| Start | 2110 |
| End | 2543 |
| Direction | + |
Sequence
Transcript: 306 (bp)
ATGGCACTGCCGAGCAGACTCAAAATTCGAGGAATTCGGTCCTTTGGGCCAGAAGCTGAGGACACGCAGGCACTCGACTTTTCGCCGCCACTTGTCGTGATCGTCGGTGACAATGGCACCGGCAAGACCACAATAATCGAGTGTCTGCGGTTCGCTTTGACGGGCGAAGTTCCACCTGGATCTCACAAAGGCCTGCACTTTCTGCACGAGTCAGCACCGCTGTCGGATGGTGAGAGCACCCTCGAGGGCGAAGTCGAGCTCACGGTGAGTCCTTGGTTGAAATTTAGCACGAAATTGTTGAGCTTT
Protein: 102 (aa)
MALPSRLKIRGIRSFGPEAEDTQALDFSPPLVVIVGDNGTGKTTIIECLRFALTGEVPPGSHKGLHFLHESAPLSDGESTLEGEVELTVSPWLKFSTKLLSF
| Type | Start | End | Length |
| CDS |
2110 |
2178 |
69 |
| CDS |
2243 |
2298 |
56 |
| CDS |
2360 |
2540 |
181 |
| intron |
2179 |
2242 |
64 |
| intron |
2299 |
2359 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001661899 |
DNA repair protein rad50 [Aedes aegypti] gb|EAT36122.1| DNA repair protein rad50 [Aedes aegypti] |
7e-20 |
| Pfam |
PF05729.7 |
NACHT domain |
0.0012 |
| Pfam |
PF03205.9 |
Molybdopterin guanine dinucleotide synthesis protein B |
0.0031 |
| Pfam |
PF08477.8 |
Miro-like protein |
0.012 |
| Pfam |
PF07728.9 |
AAA domain (dynein-related subfamily) |
0.042 |
| Pfam |
PF02463.14 |
RecF/RecN/SMC N terminal domain |
1.2e-05 |
| Pfam |
PF13245.1 |
Part of AAA domain |
0.00067 |
| Pfam |
PF13401.1 |
AAA domain |
0.033 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.0014 |
| Pfam |
PF13604.1 |
AAA domain |
0.024 |
| Pfam |
PF13521.1 |
AAA domain |
0.059 |
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.00021 |
| Pfam |
PF13238.1 |
AAA domain |
0.15 |
| Pfam |
PF13166.1 |
AAA domain |
0.0075 |
| Pfam |
PF13476.1 |
AAA domain |
1.1e-18 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
0.017 |
| Pfam |
PF13304.1 |
AAA domain |
1.9e-05 |
| Pfam |
PF13175.1 |
AAA ATPase domain |
9.6e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes