MidgeBase gene description page [Pn.11261]
Outline
| Gene ID | Pn.11261 |
| Type | Protein coding gene |
| Scaffold | PnScaf13080 |
| Start | 48716 |
| End | 51978 |
| Direction | + |
Sequence
Transcript: 3108 (bp)
ATGCTGAGGTATTTGATCCTTTTCTTCCTTTCCTCTTTGCTGTTATCATTCGTCGAGTCTTCGCAAGCATATGTCGCAAAACCTCAGCTTAAACCAGAGACAGTCGAAACAGCCCGCATAACTCTCGAACCAATAAATGGAACTAGAAATTTCCGAATGCATGGAAAGAAAGCCAAAGACGATCGTTGGGTGTGGGACGGCAAGGAAGGACGATATATTTACTGCGTTCGTGAAGCAACGAGTCCGTGTGAGCAGCTAGAAATCAAGCAATGCTTCGGCCAAAACATCCCTTATCAAAATACAAATCAAGATCTGACGCAGTTTTTTAGCCAAGATGTTGCACTCGAGCGCATCACAAGCTATCAAGCTCTCAAATATGTGCCAAAATGCTGGAGCGTAATTCAGCCGTTTCTGTGTGCAGTGCTCTTTCCGAAGTGCGAAAAAATCAACGACAAAGACATGGTGTACTTGCCGTCTTTGGAAATGTGTAAAATCACGATGGAGCCCTGCAAAATTCTCTACGACACTCCGTATTTCCCCGAGTTCCTCAAATGCAACGAAACGATCTTCCCTTCGAAGTGCAACAACGACGTGCGAGAAATGAAATTCAACTTGACCGGAGAGTGTCTTCATCCGCTCGTGCCCACAATCGATCCGGCCAACAGCTACACGGACATCGAGGGATGTGGCCTCGAGTGCAAAGACCCTCTTTATACCGACGACGAGCATAGACAAATAAGAAAGCTGATTGGGTGGTGCGCGAGCATTTCGCTGGTGCTGCATCTTTTTGCAATTTTTACGTTCACCGTCGACTGGCACAATGGCAACAAGTATCCTGCACTCATAATTTTCTACGTGAATCTCTGCTACTTAATCTCGTGCATCGGATGGCTGGCACAATTTATTCCCGGCGGGCGGCAGGATATCGCGTGTCGCTTCGATAATACACTCAAACAGGGAGAACCGAGTGGCGGTGAAAACTTATCGTGCATAATGGTCTTCATTCTCGTCTACTACTTCTTGATAGCGGCCATGTGCTGGTTCGTAATATTTACGTACGCATGGCACATGAGCTTCCGAGCAATAGGAAAAATTCAAGAGCGAATCGACAAGAAGGCGTCGTATTTTCATGTAATCTCCTGGAGCATCCCGCTCGTGCTCACGATCACTATTCTGGCCATTTCCGAAGTCGATGCCAATAGCACGGTCGGAATTTGCTTCGTCGGCTATATGAATCATTCGATAAGGGGTGGCTTTGTGCTGGGACCAGTGCTCTGCAGTCTTTTGATTGGCGGCTACTTTCTCATACGAGGCATCGTCATACTGGTGAATTTGAAAATTTCTAGCAAACAAATTATATCGACCAAGGCAAACAAGAAGATACGACAATCAATCGTGCGAATGGGAGTGTGCTCGACTCTGATGTTTATCTTTATCATTACAACCATCGTGTGCCATGTTTATGAGTTCAAAAACTCCACCAAGTGGGCGATAAGTTTGAGAGAGTCCATAATATGTAAAATAAGCACGATTTACTCGGACGACTCGTCATCGTGTAGGATTCTCAATCGACCGTCGATATCGATTTTACAGCTTCATCTGATGTCACTTTTTGCTTCCGGCATCGTTATGGCTTCGTTTGTGTTTACGCCTTCGTCCCTTGAAATTTGGTCTCGCTACTTTCGTCGCAAATTTGGCAAGAAAGTCGACGAACCGCTGAAACTTCAAAAGCACAAAGTGATCGCGCAAGCCTTCGCCAAAAGAAAAGTCTTTCAAAATCAGGGGAGGCTTTCAATTAGCTTCCACAACTCTCACACTGATCCCGTGGGCTTGAAGTTTGACATGAGCGACATGAATTCGGCAGCCGGCTCCCACGATTTCAGCTCAACGTGGGCCAACAATCTTCCCCGTTTCGTGAATCGAAGGTATGCGCTGACGGGATGTCCTTCATCGGGCTCGCGTTCCTCTCACGGGCACCGTAGAAACTCAATCGATTCAGAGATAAGCTTCAGCGTTCGGCACGTGTCGGTTGAATCGAGAAGGAATTCAAATGACTCACAGGTCTCTGTCAAGATTGCAGAAATGAAGACGAAAGTGGCGAGCCGATCTCGTGCCTCGAAACCCAAGCCGCGATCGTCGCGCCATCATCAAAAGCGCGACTTTGCGTCAAGGAGATACAGCCGAAAGGAGAGTAGCACGTCCATGGAATCGCAAGCTCTGGCGATTGCTCATAAAGGCGCTAATTCGACGTCTACGATGGTGGCTGATAACAACATGCTCGTCCCAGTCTCGAATCGAAGACGATCAGGCATTGCGGACTTGAGTCCGGAACAGATCAATGAGCTTATAGCGAAAAACCGCTTTTTGCTGCCCTATTTGACGACGTCCGAGGATGAAAAGTCATCGATTGGCTCGTTCAACATTCAGGACTCGAAACTGGACGCGATCCTCAAACAAATCGGTCTGTCCGAGCATAAAATAATAGAAAATAAGTTGAACAGTGACACAAATATTGAAGGCGATTCGGGTGACGCTAAAGTGAGGAAGTCAACCAATGATTATTCGGATCTAAGCAGTAAGGAGAATATCGCGAGGGCGATTAAGGCGAACAATAGAAGCATCAACAACAGCAAGAAAACGCTCAAGGCGTCGGGTAGCACAAGAGGCAGAAAGGGAAGAAAGTCATCGAGATCGGTGACTCGCAACGCAAACCCTCTCTCGATAACAAACAGCTCCGGAAAGATGAAACTTGACAAGAAGATTGAGAGGGAACGGAAAGCCAAAGAGATTTTGAGGAAGTCCCAGGAAGAAACGTATTTGGCGATAGAAATGACGCCTCTTCAGGGCTCTTACTCCGGCAGAAGCGACATCGGCATACAGACGGAATTAGGAGACGGCTACACCCTCTCGTCGATGGAGTTTGCCGAAAATTTGATGAAACAAGATCGACGTGAAGAGGACGATGAGGACGTCGAGGAGGATGATGAAGATGCAACAGAAAATTTCAAGTTGCTTGCAAGACGAAGCAACATAATGAAGCGGCGAGACACGAATGAACTCTCACTGACGGAATCTGAGAAACTCAAACTACTTTTACTGCCTTCGAAA
Protein: 1036 (aa)
MLRYLILFFLSSLLLSFVESSQAYVAKPQLKPETVETARITLEPINGTRNFRMHGKKAKDDRWVWDGKEGRYIYCVREATSPCEQLEIKQCFGQNIPYQNTNQDLTQFFSQDVALERITSYQALKYVPKCWSVIQPFLCAVLFPKCEKINDKDMVYLPSLEMCKITMEPCKILYDTPYFPEFLKCNETIFPSKCNNDVREMKFNLTGECLHPLVPTIDPANSYTDIEGCGLECKDPLYTDDEHRQIRKLIGWCASISLVLHLFAIFTFTVDWHNGNKYPALIIFYVNLCYLISCIGWLAQFIPGGRQDIACRFDNTLKQGEPSGGENLSCIMVFILVYYFLIAAMCWFVIFTYAWHMSFRAIGKIQERIDKKASYFHVISWSIPLVLTITILAISEVDANSTVGICFVGYMNHSIRGGFVLGPVLCSLLIGGYFLIRGIVILVNLKISSKQIISTKANKKIRQSIVRMGVCSTLMFIFIITTIVCHVYEFKNSTKWAISLRESIICKISTIYSDDSSSCRILNRPSISILQLHLMSLFASGIVMASFVFTPSSLEIWSRYFRRKFGKKVDEPLKLQKHKVIAQAFAKRKVFQNQGRLSISFHNSHTDPVGLKFDMSDMNSAAGSHDFSSTWANNLPRFVNRRYALTGCPSSGSRSSHGHRRNSIDSEISFSVRHVSVESRRNSNDSQVSVKIAEMKTKVASRSRASKPKPRSSRHHQKRDFASRRYSRKESSTSMESQALAIAHKGANSTSTMVADNNMLVPVSNRRRSGIADLSPEQINELIAKNRFLLPYLTTSEDEKSSIGSFNIQDSKLDAILKQIGLSEHKIIENKLNSDTNIEGDSGDAKVRKSTNDYSDLSSKENIARAIKANNRSINNSKKTLKASGSTRGRKGRKSSRSVTRNANPLSITNSSGKMKLDKKIERERKAKEILRKSQEETYLAIEMTPLQGSYSGRSDIGIQTELGDGYTLSSMEFAENLMKQDRREEDDEDVEEDDEDATENFKLLARRSNIMKRRDTNELSLTESEKLKLLLLPSK
| Type | Start | End | Length |
| CDS |
48716 |
48723 |
8 |
| CDS |
48802 |
50307 |
1506 |
| CDS |
50382 |
51975 |
1594 |
| intron |
48724 |
48801 |
78 |
| intron |
50308 |
50381 |
74 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001842080 |
smoothened [Culex quinquefasciatus] gb|EDS37618.1| smoothened [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR015526 |
Frizzled-related |
|
| InterPro |
IPR020067 |
Frizzled domain |
|
| InterPro |
IPR017981 |
GPCR, family 2-like |
|
| InterPro |
IPR000539 |
Frizzled protein |
|
| Gene Ontology(BP) |
GO:0007166 |
cell surface receptor linked signaling pathway |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0004888 |
transmembrane signaling receptor activity |
|
| Pfam |
PF01392.17 |
Fz domain |
2.2e-15 |
| Pfam |
PF01534.12 |
Frizzled/Smoothened family membrane region |
5e-97 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0003444 |
| P. humanus |
PHUM190020-PA |
| P. vanderplanki |
Pv.04033 |
| A. aegypti |
AAEL006669 |
| T. castaneum |
TC005545 |
| C. quinquefasciatus |
CPIJ802019 |
| A. gambiae |
AGAP008625 |
| N. vitripennis |
NV11077-PA |
| M. musculus |
ENSMUSG00000001761 |
| B. mori |
BGIBMGA008885-TA |
| S. invicta |
SI2.2.0_10517 |
| A. mellifera |
GB10379-PA |
| H. sapiens |
ENSP00000249373 |