MidgeBase gene description page [Pn.11216]
Outline
| Gene ID | Pn.11216 |
| Type | Protein coding gene |
| Scaffold | PnScaf13017 |
| Start | 4014 |
| End | 5369 |
| Direction | + |
Sequence
Transcript: 1299 (bp)
ATGCCAAAGATGAAGTACGAAGTACTCGTTCTCCTCGTCGTTCTCGCTCGTTATCAGCATCAGTTGCAGTGCAGAAGTGTCGTAAAGAAGCGGGTTTTAGACTACGACGCTGAAAGTGTGTACTCGGATTACTTTGAGACGACTGAGAGTGACAGTAAAGTCACACAAGATACAACCACCACCGAATCAGTTGACAGCTCGGATGAGGCTAAACAAAGTGATAAGGAAATTGAATCCATCGAGACAGACGACGATGGTGTAACGTGCAGCGCATCGAACGTGAAAGAAATCCTATCGGCATACGATGTCGAAAACTACGTGCTCGTGATGTTTCGCCTAAATGTAACGGCAAATGACAAGGAGCTGGTGTTTTTCTTGAACTTGGCTCGAAGATTTTCGGAGGCGTCGGCACTGTTCATGAACCATCGATTTATCGTCATCACCACTGACCAGTCGAGCGACATTGTAACAGATTTCATTGAGAAAGAGGCTTATCCAAGCGACATCATCGTCATCGACGACGATGCATATCCGGACTTGGGCTTTGTGATTGACTTCGACGAGCTCCATGTGTATGTCGTCGATCAATGCGGAAAGCTCGCGTACATCATTGTGCCGCCTTGGAGCTCTGCGCAACATCCGTACGTGAAAGCTGCGCTTCTATCCACAATACTCGACGTGCCGTGCGACTGCAACTTTGACATGATGGAAAGTCATTTTGATCTCGGCGAAGCAACAGATGAGGCAGCGACAAAGTCGGAGACGACAACGGTGTCTTTGCAATACGTCATGAATGAACTCAGTAGCGATGACGACGACATTGAAAACATTGAGCAGTTGCTTGACAACCCCAACACCATCAATATGTCAATACCTGTTGATGAGAAAAGCTCACTTCCGCTCAGAGTCATCATTCCTTCAGATCACGTTCACTTTGACAATAACTCAAATTCGTACTACAGATACAGGGAAATCATTCTGAAAAGCGATGACAACGACTATCACCAGCATTTCGAGAGTGCAGACGTGCTGCTCGATGTCAACGATAATCGCTTGCAGAATTTCACCGAAACAGACATGTTTGTAGGCAACAATTCGCTCAGCGACATTAGGAAGCGGACAAGTAACAAAATACTCGTAAATCGCCTCGGATATTTCTACGAAGTGGTGAAGGAGCAAAATGGCGAGGTTTTTGAAGTAGTGCCGATGGACATTGATGTCGTAAAAATGGCAAAAACTCGAATTTTCGGTGTCCAACATCACTACAAACAACTTAATAAATGGCTGTTTTGTAAGATT
Protein: 433 (aa)
MPKMKYEVLVLLVVLARYQHQLQCRSVVKKRVLDYDAESVYSDYFETTESDSKVTQDTTTTESVDSSDEAKQSDKEIESIETDDDGVTCSASNVKEILSAYDVENYVLVMFRLNVTANDKELVFFLNLARRFSEASALFMNHRFIVITTDQSSDIVTDFIEKEAYPSDIIVIDDDAYPDLGFVIDFDELHVYVVDQCGKLAYIIVPPWSSAQHPYVKAALLSTILDVPCDCNFDMMESHFDLGEATDEAATKSETTTVSLQYVMNELSSDDDDIENIEQLLDNPNTINMSIPVDEKSSLPLRVIIPSDHVHFDNNSNSYYRYREIILKSDDNDYHQHFESADVLLDVNDNRLQNFTETDMFVGNNSLSDIRKRTSNKILVNRLGYFYEVVKEQNGEVFEVVPMDIDVVKMAKTRIFGVQHHYKQLNKWLFCKI
| Type | Start | End | Length |
| CDS |
4014 |
4605 |
592 |
| CDS |
4660 |
5366 |
707 |
| intron |
4606 |
4659 |
54 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003250403 |
PREDICTED: hypothetical protein LOC100577712 [Apis mellifera] |
8e-12 |
| InterPro |
IPR007671 |
Selenoprotein P, N-terminal |
|
| Gene Ontology(MF) |
GO:0008430 |
selenium binding |
|
| Pfam |
PF04592.9 |
Selenoprotein P, N terminal region |
3.5e-08 |
| Pfam |
PF11488.3 |
Transcriptional regulatory protein LGE1 |
0.3 |
| Pfam |
PF12506.3 |
Protein of unknown function (DUF3713) |
0.24 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP003297 |
| C. quinquefasciatus |
CPIJ001667 |
| A. aegypti |
AAEL014761 |