MidgeBase gene description page [Pn.11202]
Outline
| Gene ID | Pn.11202 |
| Type | Protein coding gene |
| Scaffold | PnScaf12977 |
| Start | 4731 |
| End | 5624 |
| Direction | + |
Sequence
Transcript: 891 (bp)
ATGGCAAACAGAACGCTCAAAGATGCGAAAAATATACACGGAACGAATCCGCAGTACCTGGTGGAGAAAATTATTCGATCAAGAATTTACGATTCACAATACTGGAAGGAAAGCTGTTTTGCGCTCACAGCGGAGCTGATGGTCGATAAGGCCATGGAACTGCGCTACATTGGAGGAGTCTATGGTGGAAATATCAAACCCACGCCATTTATTTGTTTGATATTGAAGTTCCTTCAAATCCAGCCAGAAAAGGACATTGTCATCGAGTTCATTAAAAATGAAGAATTCAAGTATGTGCGTGCACTTGGTGCATTCTATTTGCGACTCACCGCATCAGCCGTCGATTGCTACAAATACCTCGAGCCTCTCTACAACGACTACCGCAAGTTGAGACGGCAAAACCGAATGGGTCACTATGAGATCGTGCATATGGACGAATTTATTGATGAGCTGCTGAGGGAGGAGCGTGTTTGCGACGTCATTCTACCTCGAATCCAGAAGCGAAGCGTGCTGGAAGAAAACGGAGATCTGGATCCAAAAGTGTCCCTTCTCGACGACAATTTGGACATTTCATCCGCCAGTGAGGAAGAAGAAGAGGTCAAGGTCAAAAAGCCAGAAGTCACAAAACATCAGACGGTCAAGTCTTCAAGCCGCAGAAGCAGAAGTCGCTCGTCCTCCCGCGAAAAATACAAGAAGTCAAAGGAACGAAGACGTGACGACTCGCCATTAAGGAAGAAGTATAGAGAAGAGAGGAGGGACCGCGACAGAAGGCGGTCGCCGGAAAGAGAAAGACGACGTTCGAGATCAGCTGAAAGATCAAGACACAACAGAGACGACCGTTACTACAAGCGCGAGAGAAGCTACGAGAGAGAACGCGACAGACGTCGATAT
Protein: 297 (aa)
MANRTLKDAKNIHGTNPQYLVEKIIRSRIYDSQYWKESCFALTAELMVDKAMELRYIGGVYGGNIKPTPFICLILKFLQIQPEKDIVIEFIKNEEFKYVRALGAFYLRLTASAVDCYKYLEPLYNDYRKLRRQNRMGHYEIVHMDEFIDELLREERVCDVILPRIQKRSVLEENGDLDPKVSLLDDNLDISSASEEEEEVKVKKPEVTKHQTVKSSSRRSRSRSSSREKYKKSKERRRDDSPLRKKYREERRDRDRRRSPERERRRSRSAERSRHNRDDRYYKRERSYERERDRRRY
| Type | Start | End | Length |
| CDS |
4731 |
5621 |
891 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001648995 |
hypothetical protein AaeL_AAEL004355 [Aedes aegypti] gb|EAT44251.1| conserved hypothetical protein [Aedes aegypti] |
1e-100 |
| InterPro |
IPR005037 |
Pre-mRNA-splicing factor 38 |
|
| Pfam |
PF12871.2 |
Pre-mRNA-splicing factor 38-associated hydrophilic C-term |
1.9 |
| Pfam |
PF03371.10 |
PRP38 family |
3.3e-68 |
| Pfam |
PF10243.4 |
Microtubule-binding protein MIP-T3 |
6.5 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.05224 |
| B. mori |
BGIBMGA013891-TA |
| P. humanus |
PHUM138720-PA |
| S. invicta |
SI2.2.0_03612 |
| D. melanogaster |
FBgn0050342 |
| C. quinquefasciatus |
CPIJ008907 |
| A. aegypti |
AAEL004355 |
| M. musculus |
ENSMUSG00000063800 |
| H. melpomene |
HMEL011117-PA |
| A. mellifera |
GB13608-PA |
| A. gambiae |
AGAP001145 |
| T. castaneum |
TC009710 |
| H. sapiens |
ENSP00000257181 |
| D. plexippus |
DPOGS214909PA |
| N. vitripennis |
NV12788-PA |