MidgeBase gene description page [Pn.11174]
Outline
| Gene ID | Pn.11174 |
| Type | Protein coding gene |
| Scaffold | PnScaf12884 |
| Start | 9749 |
| End | 11653 |
| Direction | + |
Sequence
Transcript: 1902 (bp)
ATGAATTTAACAAGGAGTCAAGTTGACGAAATCAAACCGGATTTAGAAAGAATAACTATACGAGTCGTAGGAATATTGGATGAGAGGATAATGTCGATATTTGATAGAGGTCTCCACAGCGGGTACGACCGTGAAAAATTCTTTAAAAAGTTTTCATCATTAGTCGACGAGAAACAGGCAAAAAAGCTGGTCGAGAAGCTCGATTCTGTCATAGAGTATAATCTTAAATCTAAGAAAAGATCTATCGAAGAAGATGATGAAAAGGATAATAAAAAGCAGAAAACATCTCATTTTGATTCAACGAATGGAGCCGAACCAATTTCAATGTCTGGTGCTCTAACATCGAACCAAATCAAACAGATGATGGAAAATGCTCAGCGTCAAATTGAAGAACGGAAACGAAAATTGGAAGCAATTAAAAATAATACTCCAGCTGAAAAGTATCCAACATCAGTAGCGCCAACAGTGCCAAGTATTCTCGATATGAATGCTGACGAAAGACAGCGAAAAATTGCAGAGTTACAGAAGCAAATTCAAGCTAAATTGTCAAACACGCTGGGAATTGCGCCAGGGATTGCTCCTGAAGTCACTCCTGCTCCTGTCAAGCCGGCTGACAAACCAAGGCCTCTCATTTTAGATTCGGAAGGACGAACTGTCGATACAAGCGGAAGAGAAATCAACATTCAAACTCTAACACCAACACTAAAGGCGAATATCCGAGCTAAAAAGAAGGAGACATTTAAAAATCAGCAAGCAGAAAAGGTCGCAGATGAGGCTAGAACGGCCGAACTTTCATATTTTGATGACCGAATTGTAGCAAAACCTGCAGTTCGAGGAAAGAGAGCACTGCGCTTCCATGAGCCGGGAAAGTTTGAAATGATGGCTGAACAGATGAGAATGAAAGCTCAAATGGAGAGACTTCAAAACGAAATCTCTCAAATAGCTCGAAAAACTGGCATAAGCAGTGCAACACGTCTAGCTCTGATTGCACCAAAAACTGACGTGCACAGCGATGAAGTGCCGCAAATCGAGTGGTGGGATTCCGTTATTTGTGATGATTACAACAAAGTTATCGAAGGAAAGATTCCGATTCGAGTAAAGGCTATCACTAATCTAATCGAACATCCTGTGCAAGTGCGACCTGTGAATGACCCAATTCGTGCCGCATATTTACCAGTGTTTTTAACGAAAAAAGAGCAAAAAAAGTTGAGACGACAAAATAGGAGAGAAACCTGGAAAGAAGAGCAGGAGAAGATTCGTCTCGGCTTAATTGATCCACCAGAGCCAAAGCTTAAAATTTCAAACCTCATGCGAGTTCTGGGAACAGAAGCCATTCAAGATCCTACTAAAATTGAAGCTCACGTCCGAGAACAAATGGCTCGACGTCAAAAGGCGCACGAGGACGACAACCAAGCAAGAAAGTTGACTGACGAAGAGAGGCGAGAGAAGAAAATTAAGAAACTAAAGGAGGACACTTCGATGGGAGTTCATGTGTCAGTTTACAGAATAAAGGACTTGAGTAACCAGTCGAAAAAGTTCAAGATCGAAACGAATGCAAAGCAGCTCTTCATGACGGGAGTTGTAATTCTCTTTCGCGATTGTTGCGTAGTGGTAGTCGAAGGTGGTCCGAAACAACAAAAGAAGTACCGTCGACTTATGATGCATCGAATAAAATGGGAAGAGGACTTAGTAAAATCGAATGAGGATAAAACTGAAGAGGAAGCAAACTCTTGCAAACTGGTGTGGGAAGGAAAGGTTCCTAAGCGCTCTTTTGGCGAGATCAAATTCAAACAATTTCCTATGGAAAAAGCAGTACGAGAGTTCTTTCAAAAACACCATTGCGAGCATTTATGGGATTTAGCGTATTCTGGAGCTGTTTTGGAAGTTTCATTGGACGATATT
Protein: 634 (aa)
MNLTRSQVDEIKPDLERITIRVVGILDERIMSIFDRGLHSGYDREKFFKKFSSLVDEKQAKKLVEKLDSVIEYNLKSKKRSIEEDDEKDNKKQKTSHFDSTNGAEPISMSGALTSNQIKQMMENAQRQIEERKRKLEAIKNNTPAEKYPTSVAPTVPSILDMNADERQRKIAELQKQIQAKLSNTLGIAPGIAPEVTPAPVKPADKPRPLILDSEGRTVDTSGREINIQTLTPTLKANIRAKKKETFKNQQAEKVADEARTAELSYFDDRIVAKPAVRGKRALRFHEPGKFEMMAEQMRMKAQMERLQNEISQIARKTGISSATRLALIAPKTDVHSDEVPQIEWWDSVICDDYNKVIEGKIPIRVKAITNLIEHPVQVRPVNDPIRAAYLPVFLTKKEQKKLRRQNRRETWKEEQEKIRLGLIDPPEPKLKISNLMRVLGTEAIQDPTKIEAHVREQMARRQKAHEDDNQARKLTDEERREKKIKKLKEDTSMGVHVSVYRIKDLSNQSKKFKIETNAKQLFMTGVVILFRDCCVVVVEGGPKQQKKYRRLMMHRIKWEEDLVKSNEDKTEEEANSCKLVWEGKVPKRSFGEIKFKQFPMEKAVREFFQKHHCEHLWDLAYSGAVLEVSLDDI
| Type | Start | End | Length |
| CDS |
9749 |
11650 |
1902 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001661880 |
Trisn small nuclear ribonucleoprotein, putative [Aedes aegypti] gb|EAT36165.1| Trisn small nuclear ribonucleoprotein, putative [Aedes aegypti] |
0.0 |
| InterPro |
IPR013881 |
Pre-mRNA-splicing factor 3 |
|
| InterPro |
IPR010541 |
Domain of unknown function DUF1115 |
|
| Pfam |
PF08572.5 |
pre-mRNA processing factor 3 (PRP3) |
2e-66 |
| Pfam |
PF06544.7 |
Protein of unknown function (DUF1115) |
4.5e-38 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA012163-TA |
| S. invicta |
SI2.2.0_12409 |
| H. sapiens |
ENSP00000315379 |
| N. vitripennis |
NV17006-PA |
| H. sapiens |
ENSP00000463756 |
| D. melanogaster |
FBgn0036915 |
| P. humanus |
PHUM360510-PA |
| A. gambiae |
AGAP004682 |
| H. sapiens |
ENSP00000463374 |
| A. mellifera |
GB10936-PA |
| H. sapiens |
ENSP00000387844 |
| A. aegypti |
AAEL011745 |
| H. melpomene |
HMEL010176-PA |
| H. sapiens |
ENSP00000463536 |
| C. quinquefasciatus |
CPIJ006146 |
| P. vanderplanki |
Pv.03385 |
| T. castaneum |
TC000245 |
| M. musculus |
ENSMUSG00000015748 |
| H. sapiens |
ENSP00000445421 |
| D. plexippus |
DPOGS214990PA |