MidgeBase gene description page [Pn.11172]
Outline
| Gene ID | Pn.11172 |
| Type | Protein coding gene |
| Scaffold | PnScaf12884 |
| Start | 4043 |
| End | 6488 |
| Direction | + |
Sequence
Transcript: 1434 (bp)
ATGGAGGCGCCCGAGTTTAAAGATTTTGCCAAATCAATGGTTGATTACATCGCCAATTACTTGGAAAATATTCGCGATCGACCTGTACTTCCATCAGTGCAGCCTGGTTATCTACGTCCATTGATTCCCGAAAATGCACCGCAAAAACCTGAAACCTGGATGGACGTCATGGTTGACATTGAGCGAGTTATTATGCCCGGTGTGACTCACTGGCACTCTCCGCGGTTCCACGCATATTTTCCCACCGCAAACTCTTACCCCGCAATCGTTGCTGATATGCTGAGTGGAGCCATTGCCTGCATTGGATTTACATGGATCGCCTCTCCAGCATGTACTGAATTAGAAGTCGTTATGTTGGACTGGCTAGGAAAAATGATTGGCCTTCCAGAAGAGTTCCTTGCATGTTCCGGTGGCAAAGGAGGTGGAGTCATTCAGGGCACAGCCTCGGAGGCCACACTTGTGGGTTTACTTGGTGCAAAAGCAAAAACGATGCAGAGAATCAAAGCAGAACACCCTGATTGGGACGATAACACTATTGTTTCGAAATTAGTTGCTTACAGTTCAAATCAAGCTCATTCATCAGTAGAGCGAGCAGGTCTTTTAGGTGGTGTTAAAATGAGAAGTTTGGAGGCTGATGATAATTTACAATTGCGCGGTGAGACACTCGAAGCGGCCATCAAGAAAGATTTAGCGGACGGGTTGATTCCGTTCTACGTTGTTGCCACATTGGGCACAACCAACACGTGCGCTTTTGATCGATTGGATGAACTCGGGCCAGTTGGCAATAAATACGATGTTTGGGTTCACGTAGATGCTGCTTATGCTGGAAGTGCATTTATCTGCCCTGAATACCGTGACCTCATGAAAGGTGTTGAAACTGCCGATTCTTTCAACTTTAATCCACACAAATGGATGCTCGTAAACTTCGATTGCAGCGCCATGTGGTTAAAGGATCCAAACTGGGTCGTAGATGCCTTCAACGTTGACCCGTTGTATTTGAAGCACGACCAACAAGGATCAGCACCTGACTACAGACACTGGCAGATTCCTTTAGGCAGACGTTTCAGAGCCTTAAAACTATGGTTCGTTCTTCGTCTCTACGGTATTGAGAACTTGCAGGCACACATTCGTCGACATATTAGTTATGCACAGCAATTCGAGGAGAGCTGCCGCGCAGACGATCGATTTGAAATTGTTACAAAAGTTCAAATGGGCCTCGTATGCTTCCGTTTAAAGGGCACCAATGACATTAACGAAAAGTTTCTCAAAAGAATAAACGGTCGTGGAAAAATTCATCTTGTTCCTTCAAAAATTAAGGACACATACTTCTTGAGAATGGCTGTTTGCTCACGTTTCACACAGCCAGAGGACATGGAATTTTCGTGGAAGGAAGTTAGTGAGGCTGCAACGGACATATTAAAGGAAGAACAAAAG
Protein: 478 (aa)
MEAPEFKDFAKSMVDYIANYLENIRDRPVLPSVQPGYLRPLIPENAPQKPETWMDVMVDIERVIMPGVTHWHSPRFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMLDWLGKMIGLPEEFLACSGGKGGGVIQGTASEATLVGLLGAKAKTMQRIKAEHPDWDDNTIVSKLVAYSSNQAHSSVERAGLLGGVKMRSLEADDNLQLRGETLEAAIKKDLADGLIPFYVVATLGTTNTCAFDRLDELGPVGNKYDVWVHVDAAYAGSAFICPEYRDLMKGVETADSFNFNPHKWMLVNFDCSAMWLKDPNWVVDAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGIENLQAHIRRHISYAQQFEESCRADDRFEIVTKVQMGLVCFRLKGTNDINEKFLKRINGRGKIHLVPSKIKDTYFLRMAVCSRFTQPEDMEFSWKEVSEAATDILKEEQK
| Type | Start | End | Length |
| CDS |
4043 |
4122 |
80 |
| CDS |
4943 |
5087 |
145 |
| CDS |
5155 |
5494 |
340 |
| CDS |
5561 |
6114 |
554 |
| CDS |
6171 |
6485 |
315 |
| intron |
4123 |
4942 |
820 |
| intron |
5088 |
5154 |
67 |
| intron |
5495 |
5560 |
66 |
| intron |
6115 |
6170 |
56 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAT75222 |
dopa decarboxylase [Armigeres subalbatus] |
0.0 |
| InterPro |
IPR010977 |
Aromatic-L-amino-acid decarboxylase |
|
| InterPro |
IPR015424 |
Pyridoxal phosphate-dependent transferase, major domain |
|
| InterPro |
IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
|
| InterPro |
IPR021115 |
Pyridoxal-phosphate binding site |
|
| InterPro |
IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
|
| InterPro |
IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
|
| Gene Ontology(BP) |
GO:0019752 |
carboxylic acid metabolic process |
|
| Gene Ontology(BP) |
GO:0006520 |
cellular amino acid metabolic process |
|
| Gene Ontology(MF) |
GO:0016831 |
carboxy-lyase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0030170 |
pyridoxal phosphate binding |
|
| Pfam |
PF00282.14 |
Pyridoxal-dependent decarboxylase conserved domain |
1.1e-165 |
| Pfam |
PF01212.16 |
Beta-eliminating lyase |
0.0015 |
| Pfam |
PF00155.16 |
Aminotransferase class I and II |
0.16 |
| Pfam |
PF05889.8 |
Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) |
0.13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.08933 |
| Pn.08932 |
| Pn.11173 |
| Pn.06719 |
| Pn.06722 |
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV12919-PA |
| D. plexippus |
DPOGS206235PA |
| H. melpomene |
HMEL002217-PA |
| M. musculus |
ENSMUSG00000020182 |
| A. gambiae |
AGAP009001 |
| S. invicta |
SI2.2.0_02577 |
| T. castaneum |
TC013401 |
| H. sapiens |
ENSP00000399184 |
| A. aegypti |
AAEL014632 |
| D. plexippus |
DPOGS211076PA |
| A. aegypti |
AAEL010737 |
| A. gambiae |
AGAP009091 |
| P. vanderplanki |
Pv.04397 |
| H. sapiens |
ENSP00000267845 |
| C. quinquefasciatus |
CPIJ010562 |
| A. mellifera |
GB18462-PA |
| S. invicta |
SI2.2.0_06729 |
| D. melanogaster |
FBgn0050446 |
| P. vanderplanki |
Pv.04662 |
| A. mellifera |
GB13656-PA |
| A. aegypti |
AAEL003475 |
| H. sapiens |
ENSP00000370371 |
| D. melanogaster |
FBgn0005619 |
| S. invicta |
SI2.2.0_11377 |
| D. melanogaster |
FBgn0000422 |
| H. sapiens |
ENSP00000350616 |
| D. melanogaster |
FBgn0259977 |
| A. mellifera |
GB10303-PA |
| H. sapiens |
ENSP00000389422 |
| D. plexippus |
DPOGS205057PA |
| A. aegypti |
AAEL014238 |
| B. mori |
BGIBMGA006804-TA |
| T. castaneum |
TC012567 |
| P. humanus |
PHUM248840-PA |
| P. vanderplanki |
Pv.03384 |
| A. gambiae |
AGAP007302 |
| H. melpomene |
HMEL007928-PA |
| S. invicta |
SI2.2.0_07835 |
| P. humanus |
PHUM258570-PA |
| D. melanogaster |
FBgn0000075 |
| H. melpomene |
HMEL012487-PA |
| B. mori |
BGIBMGA003199-TA |
| P. vanderplanki |
Pv.04396 |
| H. sapiens |
ENSP00000440252 |
| A. aegypti |
AAEL010735 |
| P. vanderplanki |
Pv.03383 |
| T. castaneum |
TC013480 |
| C. quinquefasciatus |
CPIJ009897 |
| B. mori |
BGIBMGA009691-TA |
| H. sapiens |
ENSP00000395069 |
| T. castaneum |
TC030580 |
| A. aegypti |
AAEL010734 |
| P. vanderplanki |
Pv.16319 |
| A. mellifera |
GB14779-PA |
| P. humanus |
PHUM515460-PA |
| D. plexippus |
DPOGS211220PA |
| N. vitripennis |
NV11109-PA |
| C. quinquefasciatus |
CPIJ013308 |
| T. castaneum |
TC013402 |
| M. musculus |
ENSMUSG00000027360 |
| C. quinquefasciatus |
CPIJ010568 |
| A. gambiae |
AGAP007305 |
| H. sapiens |
ENSP00000403644 |
| C. quinquefasciatus |
CPIJ013307 |
| N. vitripennis |
NV18137-PA |
| T. castaneum |
TC010062 |
| S. invicta |
SI2.2.0_11462 |
| A. aegypti |
AAEL003462 |
| B. mori |
BGIBMGA002958-TA |
| A. gambiae |
AGAP009090 |
| N. vitripennis |
NV11111-PA |