MidgeBase gene description page [Pn.11157]
Outline
| Gene ID | Pn.11157 |
| Type | Protein coding gene |
| Scaffold | PnScaf12855 |
| Start | 78579 |
| End | 79268 |
| Direction | + |
Sequence
Transcript: 687 (bp)
ATGTTTATTATCACAGAACTGAAATCGATCGTAAAAGTGGATCCCTCACAGTTTAAATCGCCTTTGGCAGAAGTCAGTAAAATAGAGTTGAATAAAAAATTAGCAAATAAAGTTCTCCACAATGTCGGGCTGATGATTTGTTTTCGAGAAGTGGTGTCATTCGGAGATAGCAACATAATTCCGGTCGATGGAGCGTCTCATACGGACGTTGTGTTTAGATTCATAGCTTTTCGCCCAGAGATTGGCTCGTTAATTACCGGTAAAATTAAGAACTGCACGCGCGAGGGAATTCAAGTTACTCTTGGCTTTTTCGATGACATTTTCATACCGAAAGATGAGCTCCAGCACCCGTCGAGATTTGAGGAAGCGGAGCAGGCGTGGATTTGGGAGTACCCGTTAGAAAATGGCGAAAAGCACGATCTCTTCATGGACGTGGGGGAAATCGTCAAATTCAGAGTGATTGACGAGGAATTTATGGAGCACGAACCAACTGGCCCGCCAACGGACTCCTCCTCGTTAAGTGGCGAAAACTCTTCAAGCAACAACAAATCGACCACAGACAACACGAGACCGCCCTACAGAATAATCGGAGCAATCAACGAGAGTGGGCTCGGAATCGACTCGTGGTGGACGCAAAACGCAGGCGAAGGAGCCGAGGATGAAGAGGAGGAGGAGGAGGAAGAAGGC
Protein: 229 (aa)
MFIITELKSIVKVDPSQFKSPLAEVSKIELNKKLANKVLHNVGLMICFREVVSFGDSNIIPVDGASHTDVVFRFIAFRPEIGSLITGKIKNCTREGIQVTLGFFDDIFIPKDELQHPSRFEEAEQAWIWEYPLENGEKHDLFMDVGEIVKFRVIDEEFMEHEPTGPPTDSSSLSGENSSSNNKSTTDNTRPPYRIIGAINESGLGIDSWWTQNAGEGAEDEEEEEEEEG
| Type | Start | End | Length |
| CDS |
78579 |
79265 |
687 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002027860 |
GL16275 [Drosophila persimilis] gb|EDW37579.1| GL16275 [Drosophila persimilis] |
8e-72 |
| InterPro |
IPR016027 |
Nucleic acid-binding, OB-fold-like |
|
| InterPro |
IPR003029 |
Ribosomal protein S1, RNA-binding domain |
|
| InterPro |
IPR005576 |
RNA polymerase Rpb7, N-terminal |
|
| InterPro |
IPR013238 |
RNA polymerase III, subunit Rpc25 |
|
| Gene Ontology(BP) |
GO:0006351 |
transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Pfam |
PF08292.7 |
RNA polymerase III subunit Rpc25 |
4.3e-41 |
| Pfam |
PF03876.12 |
SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 |
2.2e-10 |
| Pfam |
PF00575.18 |
S1 RNA binding domain |
0.00061 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA011753-TA |
| P. vanderplanki |
Pv.06420 |
| H. sapiens |
ENSP00000347345 |
| D. plexippus |
DPOGS204856PA |
| S. invicta |
SI2.2.0_12920 |
| T. castaneum |
TC000127 |
| C. quinquefasciatus |
CPIJ007887 |
| M. musculus |
ENSMUSG00000022476 |
| A. gambiae |
AGAP012122 |
| A. mellifera |
GB17735-PA |
| H. sapiens |
ENSP00000379761 |
| H. sapiens |
ENSP00000337627 |
| D. melanogaster |
FBgn0036188 |
| P. humanus |
PHUM041780-PA |
| H. sapiens |
ENSP00000385315 |
| N. vitripennis |
NV11941-PA |
| A. aegypti |
AAEL011866 |
| H. melpomene |
HMEL013898-PA |